image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 1-20 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
A0AVI2FER1L5Fer-1-like protein 5Chromosome-2Fer-1-like protein 5
A0PG75PLSCR5Phospholipid scramblase family member 5Chromosome-3Phospholipid scramblase family member 5
A0PJE2DHRS12Dehydrogenase/reductase SDR family member 12Chromosome-13Dehydrogenase/reductase SDR family member 12
A0ZSE6TMEM30CCell cycle control protein 50CChromosome-3Cell cycle control protein 50C
A2A2V5SERTM1Serine-rich and transmembrane domain-containing protein 1Chromosome-13Serine-rich and transmembrane domain-containing protein 1
A2A368MAGEB16Melanoma-associated antigen B16Chromosome-XMelanoma-associated antigen B16
A2CJ06DYTNDystrotelinChromosome-2Dystrotelin
A2RRL7TMEM213Transmembrane protein 213Chromosome-7Transmembrane protein 213
A2RU54HMX2Homeobox protein HMX2Chromosome-10Homeobox protein HMX2
A2VCL2CCDC162PCoiled-coil domain-containing protein 162Chromosome-6Coiled-coil domain-containing protein 162
A2VEC9SSPOSCO-spondinChromosome-7SCO-spondin
A4D0S4LAMB4Laminin subunit beta-4Chromosome-7Laminin subunit beta-4
A4D0V7CPED1Cadherin-like and PC-esterase domain-containing protein 1Chromosome-7Cadherin-like and PC-esterase domain-containing protein 1
A4D1E1ZNF804BZinc finger protein 804BChromosome-7Zinc finger protein 804B
A4D1Z8GRIFINGrifinChromosome-7Grifin
A4D250BLACEB-cell acute lymphoblastic leukemia-expressed proteinChromosome-7B-cell acute lymphoblastic leukemia-expressed protein
A4D256CDC14CDual specificity protein phosphatase CDC14CChromosome-7Dual specificity protein phosphatase CDC14C
A4IF30SLC35F4Solute carrier family 35 member F4Chromosome-14Solute carrier family 35 member F4
A5LHX3PSMB11Proteasome subunit beta type-11Chromosome-14Proteasome subunit beta type-11
A5PLK6RGSL1Regulator of G-protein signaling protein-likeChromosome-1Regulator of G-protein signaling protein-like

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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