image source:

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 121-140 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q5VT40FAM78BProtein FAM78BChromosome-1Protein FAM78B
P47901AVPR1BVasopressin V1b receptorChromosome-1Vasopressin V1b receptor
P43115PTGER3Prostaglandin E2 receptor EP3 subtypeChromosome-1Prostaglandin E2 receptor EP3 subtype
P57773GJA9Gap junction alpha-9 proteinChromosome-1Gap junction alpha-9 protein
Q5VX71SUSD4Sushi domain-containing protein 4Chromosome-1Sushi domain-containing protein 4
P0C025NUDT17Nucleoside diphosphate-linked moiety X motif 17Chromosome-1Nucleoside diphosphate-linked moiety X motif 17
Q5TA77LCE3BLate cornified envelope protein 3BChromosome-1Late cornified envelope protein 3B
Q5VY09IER5Immediate early response gene 5 proteinChromosome-1Immediate early response gene 5 protein
Q86UF4C1orf110Coiled-coil domain-containing protein C1orf110Chromosome-1Coiled-coil domain-containing protein C1orf110
Q8TBE1CNIH3Protein cornichon homolog 3Chromosome-1Protein cornichon homolog 3
Q5JRS4OR10J3Olfactory receptor 10J3Chromosome-1Olfactory receptor 10J3
Q3BBW0NBPF9Neuroblastoma breakpoint family member 9Chromosome-1Neuroblastoma breakpoint family member 9
Q96GL9FAM163AProtein FAM163AChromosome-1Protein FAM163A
Q5T2N8ATAD3CATPase family AAA domain-containing protein 3CChromosome-1ATPase family AAA domain-containing protein 3C
Q96A28SLAMF9SLAM family member 9Chromosome-1SLAM family member 9
Q5JVX7C1orf141Uncharacterized protein C1orf141Chromosome-1Uncharacterized protein C1orf141
Q5VVM6CCDC30Coiled-coil domain-containing protein 30Chromosome-1Coiled-coil domain-containing protein 30
Q6VUC0TFAP2ETranscription factor AP-2-epsilonChromosome-1Transcription factor AP-2-epsilon
A5PLK6RGSL1Regulator of G-protein signaling protein-likeChromosome-1Regulator of G-protein signaling protein-like
P50391NPY4RNeuropeptide Y receptor type 4Chromosome-10Neuropeptide Y receptor type 4

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

Write to us