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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 101-120 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q86T75NBPF11Neuroblastoma breakpoint family member 11Chromosome-1Neuroblastoma breakpoint family member 11
Q8N349OR2L13Olfactory receptor 2L13Chromosome-1Olfactory receptor 2L13
Q7Z3T1OR2W3Olfactory receptor 2W3Chromosome-1Olfactory receptor 2W3
Q5T1S8NCMAPNoncompact myelin-associated proteinChromosome-1Noncompact myelin-associated protein
A8MYJ7TTC34Tetratricopeptide repeat protein 34Chromosome-1Tetratricopeptide repeat protein 34
Q8NG84OR2AK2Olfactory receptor 2AK2Chromosome-1Olfactory receptor 2AK2
Q5VX52SPATA1Spermatogenesis-associated protein 1Chromosome-1Spermatogenesis-associated protein 1
Q9BZK8OCR1Ovarian cancer-related protein 1Chromosome-1Ovarian cancer-related protein 1
Q6IEZ7OR2T5Olfactory receptor 2T5Chromosome-1Olfactory receptor 2T5
Q8NGZ3OR13G1Olfactory receptor 13G1Chromosome-1Olfactory receptor 13G1
Q7Z5H4VN1R5Vomeronasal type-1 receptor 5Chromosome-1Vomeronasal type-1 receptor 5
Q8NDY4MDS2Myelodysplastic syndrome 2 translocation-associated proteinChromosome-1Myelodysplastic syndrome 2 translocation-associated protein
Q9P2K9PTCHD2Patched domain-containing protein 2Chromosome-1Patched domain-containing protein 2
Q5T751LCE1CLate cornified envelope protein 1CChromosome-1Late cornified envelope protein 1C
Q5T752LCE1DLate cornified envelope protein 1DChromosome-1Late cornified envelope protein 1D
Q5T754LCE1FLate cornified envelope protein 1FChromosome-1Late cornified envelope protein 1F
Q5T1A1DCST2DC-STAMP domain-containing protein 2Chromosome-1DC-STAMP domain-containing protein 2
Q5VTH9WDR78WD repeat-containing protein 78Chromosome-1WD repeat-containing protein 78
Q9GZN0GPR88Probable G-protein coupled receptor 88Chromosome-1Probable G-protein coupled receptor 88

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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