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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 41-60 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q9BYE4SPRR2GSmall proline-rich protein 2GChromosome-1Small proline-rich protein 2G
Q86X60FAM72BProtein FAM72BChromosome-1Protein FAM72B
Q6UY18LINGO4Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4Chromosome-1Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4
Q5VWM6PRAMEF13PRAME family member 13Chromosome-1PRAME family member 13
P35325SPRR2BSmall proline-rich protein 2BChromosome-1Small proline-rich protein 2B
O60478GPR137BIntegral membrane protein GPR137BChromosome-1Integral membrane protein GPR137B
Q15513SPHARProtein SPHARChromosome-1Protein SPHAR
Q5TGS1HES3Transcription factor HES-3Chromosome-1Transcription factor HES-3
O43613HCRTR1Orexin receptor type 1Chromosome-1Orexin receptor type 1
O43825B3GALT2Beta-1,3-galactosyltransferase 2Chromosome-1Beta-1,3-galactosyltransferase 2
Q96SC8DMRTA2Doublesex- and mab-3-related transcription factor A2Chromosome-1Doublesex- and mab-3-related transcription factor A2
Q5TA89HES5Transcription factor HES-5Chromosome-1Transcription factor HES-5
Q6TDP4KLHL17Kelch-like protein 17Chromosome-1Kelch-like protein 17
O14904WNT9AProtein Wnt-9aChromosome-1Protein Wnt-9a
O00341SLC1A7Excitatory amino acid transporter 5Chromosome-1Excitatory amino acid transporter 5
P0DMS8ADORA3Adenosine receptor A3Chromosome-1Adenosine receptor A3
Q9Y2T5GPR52Probable G-protein coupled receptor 52Chromosome-1Probable G-protein coupled receptor 52
O60811PRAMEF2PRAME family member 2Chromosome-1PRAME family member 2
Q9P217ZSWIM5Zinc finger SWIM domain-containing protein 5Chromosome-1Zinc finger SWIM domain-containing protein 5
Q6PIV7SLC25A34Solute carrier family 25 member 34Chromosome-1Solute carrier family 25 member 34

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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