image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 21-40 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q6IEZ7OR2T5Olfactory receptor 2T5Chromosome-1Olfactory receptor 2T5
Q8NHC4OR10J5Olfactory receptor 10J5Chromosome-1Olfactory receptor 10J5
Q6IF00OR2T2Olfactory receptor 2T2Chromosome-1Olfactory receptor 2T2
Q5T197DCST1DC-STAMP domain-containing protein 1Chromosome-1DC-STAMP domain-containing protein 1
Q8NH03OR2T3Olfactory receptor 2T3Chromosome-1Olfactory receptor 2T3
Q5VY09IER5Immediate early response gene 5 proteinChromosome-1Immediate early response gene 5 protein
P0C025NUDT17Nucleoside diphosphate-linked moiety X motif 17Chromosome-1Nucleoside diphosphate-linked moiety X motif 17
Q9Y5M6OCLMOculomedinChromosome-1Oculomedin
P35325SPRR2BSmall proline-rich protein 2BChromosome-1Small proline-rich protein 2B
Q5VWM6PRAMEF13PRAME family member 13Chromosome-1PRAME family member 13
P63135ERVK-7Endogenous retrovirus group K member 7 Pol proteinChromosome-1Endogenous retrovirus group K member 7 Pol protein
Q9NUC0SERTAD4SERTA domain-containing protein 4Chromosome-1SERTA domain-containing protein 4
Q8WW27APOBEC4Putative C->U-editing enzyme APOBEC-4Chromosome-1Putative C->U-editing enzyme APOBEC-4
P0CK97SLC35E2Solute carrier family 35 member E2Chromosome-1Solute carrier family 35 member E2
Q9BZK8OCR1Ovarian cancer-related protein 1Chromosome-1Ovarian cancer-related protein 1
Q2M5E4RGS21Regulator of G-protein signaling 21Chromosome-1Regulator of G-protein signaling 21
Q9P2K9PTCHD2Patched domain-containing protein 2Chromosome-1Patched domain-containing protein 2
Q8TE23TAS1R2Taste receptor type 1 member 2Chromosome-1Taste receptor type 1 member 2
O43825B3GALT2Beta-1,3-galactosyltransferase 2Chromosome-1Beta-1,3-galactosyltransferase 2
Q9H094NBPF3Neuroblastoma breakpoint family member 3Chromosome-1Neuroblastoma breakpoint family member 3

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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