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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 181-200 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q2QD12RPEL1Ribulose-phosphate 3-epimerase-like protein 1Chromosome-10Ribulose-phosphate 3-epimerase-like protein 1
Q5VXJ0LIPKLipase member KChromosome-10Lipase member K
Q96P64AGAP4Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4Chromosome-10Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4
Q9BQI4CCDC3Coiled-coil domain-containing protein 3Chromosome-10Coiled-coil domain-containing protein 3
Q8N456LRRC18Leucine-rich repeat-containing protein 18Chromosome-10Leucine-rich repeat-containing protein 18
Q9C056NKX6-2Homeobox protein Nkx-6.2Chromosome-10Homeobox protein Nkx-6.2
P0C7Q2ARMS2Age-related maculopathy susceptibility protein 2Chromosome-10Age-related maculopathy susceptibility protein 2
Q5T764IFIT1BInterferon-induced protein with tetratricopeptide repeats 1BChromosome-10Interferon-induced protein with tetratricopeptide repeats 1B
Q6ZQN5FOXI2Forkhead box protein I2Chromosome-10Forkhead box protein I2
Q86XD8ZFAND4AN1-type zinc finger protein 4Chromosome-10AN1-type zinc finger protein 4
Q5W064LIPJLipase member JChromosome-10Lipase member J
Q5SQS7SH2D4BSH2 domain-containing protein 4BChromosome-10SH2 domain-containing protein 4B
P59646FXYD4FXYD domain-containing ion transport regulator 4Chromosome-10FXYD domain-containing ion transport regulator 4
Q7Z4W2LYZL2Lysozyme-like protein 2Chromosome-10Lysozyme-like protein 2
Q6V0L0CYP26C1Cytochrome P450 26C1Chromosome-10Cytochrome P450 26C1
Q17RR3PNLIPRP3Pancreatic lipase-related protein 3Chromosome-10Pancreatic lipase-related protein 3
Q8N6V4C10orf53UPF0728 protein C10orf53Chromosome-10UPF0728 protein C10orf53
Q5BIV9SPRNShadow of prion proteinChromosome-10Shadow of prion protein
Q969W1ZDHHC16Probable palmitoyltransferase ZDHHC16Chromosome-10Probable palmitoyltransferase ZDHHC16

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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