image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 1-20 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
O14633LCE2BLate cornified envelope protein 2BChromosome-1Late cornified envelope protein 2B
Q5VZ19TDRD10Tudor domain-containing protein 10Chromosome-1Tudor domain-containing protein 10
O14921RGS13Regulator of G-protein signaling 13Chromosome-1Regulator of G-protein signaling 13
A6PVL3KNCNKinocilinChromosome-1Kinocilin
Q8N349OR2L13Olfactory receptor 2L13Chromosome-1Olfactory receptor 2L13
P0DMS8ADORA3Adenosine receptor A3Chromosome-1Adenosine receptor A3
Q02575NHLH1Helix-loop-helix protein 1Chromosome-1Helix-loop-helix protein 1
Q5VU57AGBL4Cytosolic carboxypeptidase 6Chromosome-1Cytosolic carboxypeptidase 6
Q6NV75GPR153Probable G-protein coupled receptor 153Chromosome-1Probable G-protein coupled receptor 153
Q5TAH2SLC9C2Sodium/hydrogen exchanger 11Chromosome-1Sodium/hydrogen exchanger 11
Q96A28SLAMF9SLAM family member 9Chromosome-1SLAM family member 9
Q8NGY9OR2L8Olfactory receptor 2L8Chromosome-1Olfactory receptor 2L8
P43115PTGER3Prostaglandin E2 receptor EP3 subtypeChromosome-1Prostaglandin E2 receptor EP3 subtype
Q96L03SPATA17Spermatogenesis-associated protein 17Chromosome-1Spermatogenesis-associated protein 17
Q86T75NBPF11Neuroblastoma breakpoint family member 11Chromosome-1Neuroblastoma breakpoint family member 11
Q3BBV0NBPF1Neuroblastoma breakpoint family member 1Chromosome-1Neuroblastoma breakpoint family member 1
O00230CORTCortistatinChromosome-1Cortistatin
Q5TA77LCE3BLate cornified envelope protein 3BChromosome-1Late cornified envelope protein 3B
O14904WNT9AProtein Wnt-9aChromosome-1Protein Wnt-9a
Q8TBE1CNIH3Protein cornichon homolog 3Chromosome-1Protein cornichon homolog 3

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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