image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 1-20 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q8IZD6SLC22A15Solute carrier family 22 member 15Chromosome-1Solute carrier family 22 member 15
Q9Y6C5PTCH2Protein patched homolog 2Chromosome-1Protein patched homolog 2
Q8N0U2TMEM61Transmembrane protein 61Chromosome-1Transmembrane protein 61
Q5TCM9LCE5ALate cornified envelope protein 5AChromosome-1Late cornified envelope protein 5A
Q7RTX1TAS1R1Taste receptor type 1 member 1Chromosome-1Taste receptor type 1 member 1
Q5VXM1CDCP2CUB domain-containing protein 2Chromosome-1CUB domain-containing protein 2
O14633LCE2BLate cornified envelope protein 2BChromosome-1Late cornified envelope protein 2B
Q8NEQ6C1orf64Uncharacterized protein C1orf64Chromosome-1Uncharacterized protein C1orf64
Q96M43NBPF4Neuroblastoma breakpoint family member 4Chromosome-1Neuroblastoma breakpoint family member 4
Q2M5E4RGS21Regulator of G-protein signaling 21Chromosome-1Regulator of G-protein signaling 21
Q8TE23TAS1R2Taste receptor type 1 member 2Chromosome-1Taste receptor type 1 member 2
Q7Z572SPATA21Spermatogenesis-associated protein 21Chromosome-1Spermatogenesis-associated protein 21
A6PVL3KNCNKinocilinChromosome-1Kinocilin
Q8NG81OR2M7Olfactory receptor 2M7Chromosome-1Olfactory receptor 2M7
Q8NG83OR2M3Olfactory receptor 2M3Chromosome-1Olfactory receptor 2M3
Q6NT89TRNP1TMF-regulated nuclear protein 1Chromosome-1TMF-regulated nuclear protein 1
Q8IZ20ZNF683Zinc finger protein 683Chromosome-1Zinc finger protein 683
P0CK97SLC35E2Solute carrier family 35 member E2Chromosome-1Solute carrier family 35 member E2
Q8NDV1ST6GALNAC3Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3Chromosome-1Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
Q7Z5A8FAM19A3Protein FAM19A3Chromosome-1Protein FAM19A3

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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