image source:

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 81-100 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q9UBP8KAAG1Kidney-associated antigen 1Chromosome-6Kidney-associated antigen 1
Q9UBN1CACNG4Voltage-dependent calcium channel gamma-4 subunitChromosome-17Voltage-dependent calcium channel gamma-4 subunit
Q9UBM8MGAT4CAlpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase CChromosome-12Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
Q9UBG7RBPJLRecombining binding protein suppressor of hairless-like proteinChromosome-20Recombining binding protein suppressor of hairless-like protein
Q9UBC7GALPGalanin-like peptideChromosome-19Galanin-like peptide
Q9UBC0ONECUT1Hepatocyte nuclear factor 6Chromosome-15Hepatocyte nuclear factor 6
Q9UBA6C6orf48Protein G8Chromosome-6Protein G8
Q9P2X7DEC1Deleted in esophageal cancer 1Chromosome-9Deleted in esophageal cancer 1
Q9P2W6C11orf21Uncharacterized protein C11orf21Chromosome-11Uncharacterized protein C11orf21
Q9P2K9PTCHD2Patched domain-containing protein 2Chromosome-1Patched domain-containing protein 2
Q9P2E8MARCH4E3 ubiquitin-protein ligase MARCH4Chromosome-2E3 ubiquitin-protein ligase MARCH4
Q9P2D8UNC79Protein unc-79 homologChromosome-14Protein unc-79 homolog
Q9P272KIAA1456Probable tRNA methyltransferase 9-like proteinChromosome-8Probable tRNA methyltransferase 9-like protein
Q9P255ZNF492Zinc finger protein 492Chromosome-19Zinc finger protein 492
Q9P217ZSWIM5Zinc finger SWIM domain-containing protein 5Chromosome-1Zinc finger SWIM domain-containing protein 5
Q9P1Z3HCN3Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3Chromosome-1Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3
Q9P1Q5OR1A1Olfactory receptor 1A1Chromosome-17Olfactory receptor 1A1
Q9P1P5TAAR2Trace amine-associated receptor 2Chromosome-6Trace amine-associated receptor 2
Q9P1P4TAAR3Putative trace amine-associated receptor 3Chromosome-6Putative trace amine-associated receptor 3
Q9P109GCNT4Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4Chromosome-5Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

Write to us