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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 61-80 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q9UKL2OR52A1Olfactory receptor 52A1Chromosome-11Olfactory receptor 52A1
Q9UKJ8ADAM21Disintegrin and metalloproteinase domain-containing protein 21Chromosome-14Disintegrin and metalloproteinase domain-containing protein 21
Q9UKI9POU2F3POU domain, class 2, transcription factor 3Chromosome-11POU domain, class 2, transcription factor 3
Q9UKG4SLC13A4Solute carrier family 13 member 4Chromosome-7Solute carrier family 13 member 4
Q9UK12ZNF222Zinc finger protein 222Chromosome-19Zinc finger protein 222
Q9UK00C3orf18Uncharacterized protein C3orf18Chromosome-3Uncharacterized protein C3orf18
Q9UJQ7SCP2D1SCP2 sterol-binding domain-containing protein 1Chromosome-20SCP2 sterol-binding domain-containing protein 1
Q9UJN7ZNF391Zinc finger protein 391Chromosome-6Zinc finger protein 391
Q9UJ42GPR160Probable G-protein coupled receptor 160Chromosome-3Probable G-protein coupled receptor 160
Q9UIR0BTNL2Butyrophilin-like protein 2Chromosome-6Butyrophilin-like protein 2
Q9UIL4KIF25Kinesin-like protein KIF25Chromosome-6Kinesin-like protein KIF25
Q9UIG5PSORS1C1Psoriasis susceptibility 1 candidate gene 1 proteinChromosome-6Psoriasis susceptibility 1 candidate gene 1 protein
Q9UIG4PSORS1C2Psoriasis susceptibility 1 candidate gene 2 proteinChromosome-6Psoriasis susceptibility 1 candidate gene 2 protein
Q9UHZ2MALAT1Metastasis-associated lung adenocarcinoma transcript 1Chromosome-11Metastasis-associated lung adenocarcinoma transcript 1
Q9UH90FBXO40F-box only protein 40Chromosome-3F-box only protein 40
Q9UGF7OR12D3Olfactory receptor 12D3Chromosome-6Olfactory receptor 12D3
Q9UGF6OR5V1Olfactory receptor 5V1Chromosome-6Olfactory receptor 5V1
Q9UGF5OR14J1Olfactory receptor 14J1Chromosome-6Olfactory receptor 14J1
Q9UF02CACNG5Voltage-dependent calcium channel gamma-5 subunitChromosome-17Voltage-dependent calcium channel gamma-5 subunit
Q9UC06ZNF70Zinc finger protein 70Chromosome-22Zinc finger protein 70

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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