image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 181-200 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q9H3Z7ABHD16BAbhydrolase domain-containing protein 16BChromosome-20Abhydrolase domain-containing protein 16B
Q9H3Y0R3HDMLPeptidase inhibitor R3HDMLChromosome-20Peptidase inhibitor R3HDML
Q9H3W5LRRN3Leucine-rich repeat neuronal protein 3Chromosome-7Leucine-rich repeat neuronal protein 3
Q9H3V2MS4A5Membrane-spanning 4-domains subfamily A member 5Chromosome-11Membrane-spanning 4-domains subfamily A member 5
Q9H346OR52D1Olfactory receptor 52D1Chromosome-11Olfactory receptor 52D1
Q9H340OR51B6Olfactory receptor 51B6Chromosome-11Olfactory receptor 51B6
Q9H339OR51B5Olfactory receptor 51B5Chromosome-11Olfactory receptor 51B5
Q9H322VCX2Variable charge X-linked protein 2Chromosome-XVariable charge X-linked protein 2
Q9H321VCX3BVariable charge X-linked protein 3BChromosome-XVariable charge X-linked protein 3B
Q9H320VCXVariable charge X-linked protein 1Chromosome-XVariable charge X-linked protein 1
Q9H2Y9SLCO5A1Solute carrier organic anion transporter family member 5A1Chromosome-8Solute carrier organic anion transporter family member 5A1
Q9H2L4TMEM60Transmembrane protein 60Chromosome-7Transmembrane protein 60
Q9H2H0CXXC4CXXC-type zinc finger protein 4Chromosome-4CXXC-type zinc finger protein 4
Q9H2C8OR51V1Olfactory receptor 51V1Chromosome-11Olfactory receptor 51V1
Q9H2C5OR52A5Olfactory receptor 52A5Chromosome-11Olfactory receptor 52A5
Q9H2C1LHX5LIM/homeobox protein Lhx5Chromosome-12LIM/homeobox protein Lhx5
Q9H2A3NEUROG2Neurogenin-2Chromosome-4Neurogenin-2
Q9H255OR51E2Olfactory receptor 51E2Chromosome-11Olfactory receptor 51E2
Q9H209OR10A4Olfactory receptor 10A4Chromosome-11Olfactory receptor 10A4
Q9H1Z8C2orf40AugurinChromosome-2Augurin

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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