image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 1-20 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q9P217ZSWIM5Zinc finger SWIM domain-containing protein 5Chromosome-1Zinc finger SWIM domain-containing protein 5
Q9H7M6ZSWIM4Zinc finger SWIM domain-containing protein 4Chromosome-19Zinc finger SWIM domain-containing protein 4
Q8NAM6ZSCAN4Zinc finger and SCAN domain-containing protein 4Chromosome-19Zinc finger and SCAN domain-containing protein 4
Q3MJ62ZSCAN23Zinc finger and SCAN domain-containing protein 23Chromosome-6Zinc finger and SCAN domain-containing protein 23
Q15695ZRSR1U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1Chromosome-5U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1
Q8TCW7ZPLD1Zona pellucida-like domain-containing protein 1Chromosome-3Zona pellucida-like domain-containing protein 1
Q12836ZP4Zona pellucida sperm-binding protein 4Chromosome-1Zona pellucida sperm-binding protein 4
P60852ZP1Zona pellucida sperm-binding protein 1Chromosome-11Zona pellucida sperm-binding protein 1
A6NK75ZNF98Zinc finger protein 98Chromosome-19Zinc finger protein 98
Q03936ZNF92Zinc finger protein 92Chromosome-7Zinc finger protein 92
A6NHJ4ZNF860Zinc finger protein 860Chromosome-3Zinc finger protein 860
Q9Y2P0ZNF835Zinc finger protein 835Chromosome-19Zinc finger protein 835
Q6ZN06ZNF813Zinc finger protein 813Chromosome-19Zinc finger protein 813
A4D1E1ZNF804BZinc finger protein 804BChromosome-7Zinc finger protein 804B
P51504ZNF80Zinc finger protein 80Chromosome-3Zinc finger protein 80
Q6ZN11ZNF793Zinc finger protein 793Chromosome-19Zinc finger protein 793
Q9Y6R6ZNF780BZinc finger protein 780BChromosome-19Zinc finger protein 780B
Q96BV0ZNF775Zinc finger protein 775Chromosome-7Zinc finger protein 775
Q15935ZNF77Zinc finger protein 77Chromosome-19Zinc finger protein 77
Q96N20ZNF75AZinc finger protein 75AChromosome-16Zinc finger protein 75A

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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