image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 161-180 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
A6NKQ9CGB1Choriogonadotropin subunit beta variant 1Chromosome-19Choriogonadotropin subunit beta variant 1
Q6NT52CGB2Choriogonadotropin subunit beta variant 2Chromosome-19Choriogonadotropin subunit beta variant 2
Q9NP62GCM1Chorion-specific transcription factor GCMaChromosome-6Chorion-specific transcription factor GCMa
Q14406CSHL1Chorionic somatomammotropin hormone-like 1Chromosome-17Chorionic somatomammotropin hormone-like 1
Q494W8CHRFAM7ACHRNA7-FAM7A fusion proteinChromosome-15CHRNA7-FAM7A fusion protein
P54219SLC18A1Chromaffin granule amine transporterChromosome-8Chromaffin granule amine transporter
Q2VIQ3KIF4BChromosome-associated kinesin KIF4BChromosome-5Chromosome-associated kinesin KIF4B
Q5K131CLLU1Chronic lymphocytic leukemia up-regulated protein 1Chromosome-12Chronic lymphocytic leukemia up-regulated protein 1
P17538CTRB1Chymotrypsinogen BChromosome-16Chymotrypsinogen B
Q8TAZ6CMTM2CKLF-like MARVEL transmembrane domain-containing protein 2Chromosome-16CKLF-like MARVEL transmembrane domain-containing protein 2
Q8NFJ8BHLHE22Class E basic helix-loop-helix protein 22Chromosome-8Class E basic helix-loop-helix protein 22
P56750CLDN17Claudin-17Chromosome-21Claudin-17
P56880CLDN20Claudin-20Chromosome-6Claudin-20
Q8N7P3CLDN22Claudin-22Chromosome-4Claudin-22
Q08708CD300CCMRF35-like molecule 6Chromosome-17CMRF35-like molecule 6
O95170CDRT1CMT1A duplicated region transcript 1 proteinChromosome-17CMT1A duplicated region transcript 1 protein
Q5T0U0CCDC122Coiled-coil domain-containing protein 122Chromosome-13Coiled-coil domain-containing protein 122
Q6ZRS4CCDC129Coiled-coil domain-containing protein 129Chromosome-7Coiled-coil domain-containing protein 129
Q96MF4CCDC140Coiled-coil domain-containing protein 140Chromosome-2Coiled-coil domain-containing protein 140
Q17RM4CCDC142Coiled-coil domain-containing protein 142Chromosome-2Coiled-coil domain-containing protein 142

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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