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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 161-180 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
O43610SPRY3Protein sprouty homolog 3Chromosome-XProtein sprouty homolog 3
O43613HCRTR1Orexin receptor type 1Chromosome-1Orexin receptor type 1
O43680TCF21Transcription factor 21Chromosome-6Transcription factor 21
O43812DUX1Double homeobox protein 1Chromosome-10Double homeobox protein 1
O43825B3GALT2Beta-1,3-galactosyltransferase 2Chromosome-1Beta-1,3-galactosyltransferase 2
O43868SLC28A2Sodium/nucleoside cotransporter 2Chromosome-15Sodium/nucleoside cotransporter 2
O43908KLRC4NKG2-F type II integral membrane proteinChromosome-12NKG2-F type II integral membrane protein
O60224SSX4Protein SSX4Chromosome-XProtein SSX4
O60320FAM189A1Protein FAM189A1Chromosome-15Protein FAM189A1
O60330PCDHGA12Protocadherin gamma-A12Chromosome-5Protocadherin gamma-A12
O60391GRIN3BGlutamate receptor ionotropic, NMDA 3BChromosome-19Glutamate receptor ionotropic, NMDA 3B
O60478GPR137BIntegral membrane protein GPR137BChromosome-1Integral membrane protein GPR137B
O60479DLX3Homeobox protein DLX-3Chromosome-17Homeobox protein DLX-3
O60548FOXD2Forkhead box protein D2Chromosome-1Forkhead box protein D2
O60688YPEL1Protein yippee-like 1Chromosome-22Protein yippee-like 1
O60811PRAMEF2PRAME family member 2Chromosome-1PRAME family member 2
O75019LILRA1Leukocyte immunoglobulin-like receptor subfamily A member 1Chromosome-19Leukocyte immunoglobulin-like receptor subfamily A member 1
O75310UGT2B11UDP-glucuronosyltransferase 2B11Chromosome-4UDP-glucuronosyltransferase 2B11
O75333TBX10T-box transcription factor TBX10Chromosome-11T-box transcription factor TBX10

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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