image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 161-180 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q96M53TBATAProtein TBATAChromosome-10Protein TBATA
Q96P64AGAP4Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4Chromosome-10Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4
Q6XLA1CASC2Protein CASC2, isoform 3Chromosome-10Protein CASC2, isoform 3
Q9C056NKX6-2Homeobox protein Nkx-6.2Chromosome-10Homeobox protein Nkx-6.2
Q5SQS7SH2D4BSH2 domain-containing protein 4BChromosome-10SH2 domain-containing protein 4B
O43174CYP26A1Cytochrome P450 26A1Chromosome-10Cytochrome P450 26A1
O43812DUX1Double homeobox protein 1Chromosome-10Double homeobox protein 1
A2RU54HMX2Homeobox protein HMX2Chromosome-10Homeobox protein HMX2
Q6ZQN5FOXI2Forkhead box protein I2Chromosome-10Forkhead box protein I2
Q9BQI4CCDC3Coiled-coil domain-containing protein 3Chromosome-10Coiled-coil domain-containing protein 3
Q5VWI1TCERG1LTranscription elongation regulator 1-like proteinChromosome-10Transcription elongation regulator 1-like protein
O94844RHOBTB1Rho-related BTB domain-containing protein 1Chromosome-10Rho-related BTB domain-containing protein 1
A6NMN3FAM170BPutative protein FAM170BChromosome-10Putative protein FAM170B
Q2QD12RPEL1Ribulose-phosphate 3-epimerase-like protein 1Chromosome-10Ribulose-phosphate 3-epimerase-like protein 1
Q8N119MMP21Matrix metalloproteinase-21Chromosome-10Matrix metalloproteinase-21
Q8IVU9C10orf107Uncharacterized protein C10orf107Chromosome-10Uncharacterized protein C10orf107
Q96PL2TECTBBeta-tectorinChromosome-10Beta-tectorin
Q32M84BTBD16BTB/POZ domain-containing protein 16Chromosome-10BTB/POZ domain-containing protein 16
Q5JSS6MEIG1Meiosis expressed gene 1 protein homologChromosome-10Meiosis expressed gene 1 protein homolog
Q8NDW4ZNF248Zinc finger protein 248Chromosome-10Zinc finger protein 248

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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