image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 161-180 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
P83105HTRA4Serine protease HTRA4Chromosome-8Serine protease HTRA4
Q49A92C8orf34Uncharacterized protein C8orf34Chromosome-8Uncharacterized protein C8orf34
Q7Z4L9PPP1R42Protein phosphatase 1 regulatory subunit 42Chromosome-8Protein phosphatase 1 regulatory subunit 42
Q8TCU3SLC7A13Solute carrier family 7 member 13Chromosome-8Solute carrier family 7 member 13
Q8NFJ8BHLHE22Class E basic helix-loop-helix protein 22Chromosome-8Class E basic helix-loop-helix protein 22
Q8NA42ZNF383Zinc finger protein 383Chromosome-19Zinc finger protein 383
Q99742NPAS1Neuronal PAS domain-containing protein 1Chromosome-19Neuronal PAS domain-containing protein 1
P34995PTGER1Prostaglandin E2 receptor EP1 subtypeChromosome-19Prostaglandin E2 receptor EP1 subtype
P20853CYP2A7Cytochrome P450 2A7Chromosome-19Cytochrome P450 2A7
Q6ZSI9CAPN12Calpain-12Chromosome-19Calpain-12
Q9H8S5CNTD2Cyclin N-terminal domain-containing protein 2Chromosome-19Cyclin N-terminal domain-containing protein 2
Q8NAM6ZSCAN4Zinc finger and SCAN domain-containing protein 4Chromosome-19Zinc finger and SCAN domain-containing protein 4
A6NFQ7DPRXDivergent paired-related homeoboxChromosome-19Divergent paired-related homeobox
P15621ZNF44Zinc finger protein 44Chromosome-19Zinc finger protein 44
Q99687MEIS3Homeobox protein Meis3Chromosome-19Homeobox protein Meis3
Q8WXB4ZNF606Zinc finger protein 606Chromosome-19Zinc finger protein 606
Q9BXT2CACNG6Voltage-dependent calcium channel gamma-6 subunitChromosome-19Voltage-dependent calcium channel gamma-6 subunit
O75346ZNF253Zinc finger protein 253Chromosome-19Zinc finger protein 253
Q14952KIR2DS3Killer cell immunoglobulin-like receptor 2DS3Chromosome-19Killer cell immunoglobulin-like receptor 2DS3
Q8NFU1BEST2Bestrophin-2Chromosome-19Bestrophin-2

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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