image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 141-160 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q9BXY5CAPS2Calcyphosin-2Chromosome-12Calcyphosin-2
Q8WWF8CAPSLCalcyphosin-like proteinChromosome-5Calcyphosin-like protein
Q6ZSI9CAPN12Calpain-12Chromosome-19Calpain-12
A8MX76CAPN14Calpain-14Chromosome-2Calpain-14
P0C5K7CT62Cancer/testis antigen 62Chromosome-15Cancer/testis antigen 62
Q5HYN5CT45A1Cancer/testis antigen family 45 member A1Chromosome-XCancer/testis antigen family 45 member A1
Q5DJT8CT45A2Cancer/testis antigen family 45 member A2Chromosome-XCancer/testis antigen family 45 member A2
Q9GZS9CHST5Carbohydrate sulfotransferase 5Chromosome-16Carbohydrate sulfotransferase 5
Q5XG92CES4ACarboxylesterase 4AChromosome-16Carboxylesterase 4A
Q8WXQ8CPA5Carboxypeptidase A5Chromosome-7Carboxypeptidase A5
Q8IVL8CPOCarboxypeptidase OChromosome-2Carboxypeptidase O
A8MTB9CEACAM18Carcinoembryonic antigen-related cell adhesion molecule 18Chromosome-19Carcinoembryonic antigen-related cell adhesion molecule 18
Q6UY09CEACAM20Carcinoembryonic antigen-related cell adhesion molecule 20Chromosome-19Carcinoembryonic antigen-related cell adhesion molecule 20
Q3KPI0CEACAM21Carcinoembryonic antigen-related cell adhesion molecule 21Chromosome-19Carcinoembryonic antigen-related cell adhesion molecule 21
Q9H7T0CATSPERBCation channel sperm-associated protein subunit betaChromosome-14Cation channel sperm-associated protein subunit beta
Q6ZRH7CATSPERGCation channel sperm-associated protein subunit gammaChromosome-19Cation channel sperm-associated protein subunit gamma
Q13166CATR1CATR tumorigenic conversion 1 proteinChromosome-7CATR tumorigenic conversion 1 protein
A0ZSE6TMEM30CCell cycle control protein 50CChromosome-3Cell cycle control protein 50C
Q6PRD7CEMP1Cementoblastoma-derived protein 1Chromosome-16Cementoblastoma-derived protein 1
Q9Y5P2CSAG2Chondrosarcoma-associated gene 2/3 proteinChromosome-XChondrosarcoma-associated gene 2/3 protein

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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