image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 141-160 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
O14904WNT9AProtein Wnt-9aChromosome-1Protein Wnt-9a
O14921RGS13Regulator of G-protein signaling 13Chromosome-1Regulator of G-protein signaling 13
O15016TRIM66Tripartite motif-containing protein 66Chromosome-11Tripartite motif-containing protein 66
O15130NPFFPro-FMRFamide-related neuropeptide FFChromosome-12Pro-FMRFamide-related neuropeptide FF
O15342ATP6V0E1V-type proton ATPase subunit e 1Chromosome-5V-type proton ATPase subunit e 1
O15353FOXN1Forkhead box protein N1Chromosome-17Forkhead box protein N1
O15375SLC16A5Monocarboxylate transporter 6Chromosome-17Monocarboxylate transporter 6
O15391YY2Transcription factor YY2Chromosome-XTranscription factor YY2
O15453NBR2Next to BRCA1 gene 2 proteinChromosome-17Next to BRCA1 gene 2 protein
O15499GSC2Homeobox protein goosecoid-2Chromosome-22Homeobox protein goosecoid-2
O15522NKX2-8Homeobox protein Nkx-2.8Chromosome-14Homeobox protein Nkx-2.8
O43174CYP26A1Cytochrome P450 26A1Chromosome-10Cytochrome P450 26A1
O43193MLNRMotilin receptorChromosome-13Motilin receptor
O43304SEC14L5SEC14-like protein 5Chromosome-16SEC14-like protein 5
O43315AQP9Aquaporin-9Chromosome-15Aquaporin-9
O43345ZNF208Zinc finger protein 208Chromosome-19Zinc finger protein 208
O43374RASA4Ras GTPase-activating protein 4Chromosome-7Ras GTPase-activating protein 4
O43448KCNAB3Voltage-gated potassium channel subunit beta-3Chromosome-17Voltage-gated potassium channel subunit beta-3
O43506ADAM20Disintegrin and metalloproteinase domain-containing protein 20Chromosome-14Disintegrin and metalloproteinase domain-containing protein 20
O43555GNRH2Progonadoliberin-2Chromosome-20Progonadoliberin-2

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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