image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 141-160 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
A8MX76CAPN14Calpain-14Chromosome-2Calpain-14
Q8N7S2DNAJC5GDnaJ homolog subfamily C member 5GChromosome-2DnaJ homolog subfamily C member 5G
Q9NS40KCNH7Potassium voltage-gated channel subfamily H member 7Chromosome-2Potassium voltage-gated channel subfamily H member 7
Q502W6VWA3Bvon Willebrand factor A domain-containing protein 3BChromosome-2von Willebrand factor A domain-containing protein 3B
Q8WWZ1IL1F10Interleukin-1 family member 10Chromosome-2Interleukin-1 family member 10
Q9Y5Z6B3GALT1Beta-1,3-galactosyltransferase 1Chromosome-2Beta-1,3-galactosyltransferase 1
Q9HC97GPR35G-protein coupled receptor 35Chromosome-2G-protein coupled receptor 35
Q8TDS5OXER1Oxoeicosanoid receptor 1Chromosome-2Oxoeicosanoid receptor 1
Q8IVL8CPOCarboxypeptidase OChromosome-2Carboxypeptidase O
P32314FOXN2Forkhead box protein N2Chromosome-2Forkhead box protein N2
E5RQL4FTCDNL1Formiminotransferase N-terminal subdomain-containing proteinChromosome-2Formiminotransferase N-terminal subdomain-containing protein
P81277PRLHProlactin-releasing peptideChromosome-2Prolactin-releasing peptide
Q5W5W9RESP18Regulated endocrine-specific protein 18Chromosome-2Regulated endocrine-specific protein 18
Q9HB89NMUR1Neuromedin-U receptor 1Chromosome-2Neuromedin-U receptor 1
Q9NUZ1ACOXLAcyl-coenzyme A oxidase-like proteinChromosome-2Acyl-coenzyme A oxidase-like protein
Q5MAI5CDKL4Cyclin-dependent kinase-like 4Chromosome-2Cyclin-dependent kinase-like 4
Q9H6D8FNDC4Fibronectin type III domain-containing protein 4Chromosome-2Fibronectin type III domain-containing protein 4
Q9HB15KCNK12Potassium channel subfamily K member 12Chromosome-2Potassium channel subfamily K member 12
P35504UGT1A5UDP-glucuronosyltransferase 1-5Chromosome-2UDP-glucuronosyltransferase 1-5
Q03828EVX2Homeobox even-skipped homolog protein 2Chromosome-2Homeobox even-skipped homolog protein 2

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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