image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 141-160 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q9BXT5TEX15Testis-expressed sequence 15 proteinChromosome-8Testis-expressed sequence 15 protein
Q50LG9LRRC24Leucine-rich repeat-containing protein 24Chromosome-8Leucine-rich repeat-containing protein 24
Q30KP9DEFB135Beta-defensin 135Chromosome-8Beta-defensin 135
Q30KP8DEFB136Beta-defensin 136Chromosome-8Beta-defensin 136
Q7LC44ARCActivity-regulated cytoskeleton-associated proteinChromosome-8Activity-regulated cytoskeleton-associated protein
Q6ZMY9ZNF517Zinc finger protein 517Chromosome-8Zinc finger protein 517
Q08648SPAG11BSperm-associated antigen 11BChromosome-8Sperm-associated antigen 11B
Q05901CHRNB3Neuronal acetylcholine receptor subunit beta-3Chromosome-8Neuronal acetylcholine receptor subunit beta-3
Q8N0Z2ABRAActin-binding Rho-activating proteinChromosome-8Actin-binding Rho-activating protein
Q8NHS2GOT1L1Putative aspartate aminotransferase, cytoplasmic 2Chromosome-8Putative aspartate aminotransferase, cytoplasmic 2
O95214LEPROTL1Leptin receptor overlapping transcript-like 1Chromosome-8Leptin receptor overlapping transcript-like 1
Q9HAK2EBF2Transcription factor COE2Chromosome-8Transcription factor COE2
Q5PT55SLC10A5Sodium/bile acid cotransporter 5Chromosome-8Sodium/bile acid cotransporter 5
Q6UXT8FAM150AProtein FAM150AChromosome-8Protein FAM150A
Q5GH73XKR6XK-related protein 6Chromosome-8XK-related protein 6
Q9BYZ6RHOBTB2Rho-related BTB domain-containing protein 2Chromosome-8Rho-related BTB domain-containing protein 2
Q02509OC90Otoconin-90Chromosome-8Otoconin-90
Q6UXB3LYPD2Ly6/PLAUR domain-containing protein 2Chromosome-8Ly6/PLAUR domain-containing protein 2
Q8IX29FBXO16F-box only protein 16Chromosome-8F-box only protein 16
C9JL84HHLA1HERV-H LTR-associating protein 1Chromosome-8HERV-H LTR-associating protein 1

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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