image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 121-140 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
E9PQR5NPIPB8Nuclear pore complex-interacting protein family member B8Chromosome-16Nuclear pore complex-interacting protein family member B8
F8WCM5INS-IGF2Insulin, isoform 2Chromosome-11Insulin, isoform 2
H3BV60TGFBR3LTransforming growth factor-beta receptor type 3-like proteinChromosome-19Transforming growth factor-beta receptor type 3-like protein
I3L273GFYGolgi-associated olfactory signaling regulatorChromosome-19Golgi-associated olfactory signaling regulator
K9M1U5IFNL4Interferon lambda-4Chromosome-19Interferon lambda-4
O00110OVOL3Putative transcription factor ovo-like protein 3Chromosome-19Putative transcription factor ovo-like protein 3
O00222GRM8Metabotropic glutamate receptor 8Chromosome-7Metabotropic glutamate receptor 8
O00230CORTCortistatinChromosome-1Cortistatin
O00270GPR3112-(S)-hydroxy-5,8,10,14-eicosatetraenoic acid receptorChromosome-612-(S)-hydroxy-5,8,10,14-eicosatetraenoic acid receptor
O00295TULP2Tubby-related protein 2Chromosome-19Tubby-related protein 2
O00321ETV2ETS translocation variant 2Chromosome-19ETS translocation variant 2
O00341SLC1A7Excitatory amino acid transporter 5Chromosome-1Excitatory amino acid transporter 5
O00398P2RY10Putative P2Y purinoceptor 10Chromosome-XPutative P2Y purinoceptor 10
O00574CXCR6C-X-C chemokine receptor type 6Chromosome-3C-X-C chemokine receptor type 6
O00591GABRPGamma-aminobutyric acid receptor subunit piChromosome-5Gamma-aminobutyric acid receptor subunit pi
O00624SLC17A2Sodium-dependent phosphate transport protein 3Chromosome-6Sodium-dependent phosphate transport protein 3
O14598VCYTestis-specific basic protein Y 1Chromosome-YTestis-specific basic protein Y 1
O14609XKRYTestis-specific XK-related protein, Y-linkedChromosome-YTestis-specific XK-related protein, Y-linked
O14633LCE2BLate cornified envelope protein 2BChromosome-1Late cornified envelope protein 2B
O14804TAAR5Trace amine-associated receptor 5Chromosome-6Trace amine-associated receptor 5

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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