image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 121-140 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q8NG81OR2M7Olfactory receptor 2M7Chromosome-1Olfactory receptor 2M7
Q5TID7CCDC181Coiled-coil domain-containing protein 181Chromosome-1Coiled-coil domain-containing protein 181
P47901AVPR1BVasopressin V1b receptorChromosome-1Vasopressin V1b receptor
Q6PXP3SLC2A7Solute carrier family 2, facilitated glucose transporter member 7Chromosome-1Solute carrier family 2, facilitated glucose transporter member 7
A8MYJ7TTC34Tetratricopeptide repeat protein 34Chromosome-1Tetratricopeptide repeat protein 34
Q6VUC0TFAP2ETranscription factor AP-2-epsilonChromosome-1Transcription factor AP-2-epsilon
Q96DD0LRRC39Leucine-rich repeat-containing protein 39Chromosome-1Leucine-rich repeat-containing protein 39
Q96GL9FAM163AProtein FAM163AChromosome-1Protein FAM163A
Q4KMZ8NKAIN1Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1Chromosome-1Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1
Q8NEQ6C1orf64Uncharacterized protein C1orf64Chromosome-1Uncharacterized protein C1orf64
A5PLK6RGSL1Regulator of G-protein signaling protein-likeChromosome-1Regulator of G-protein signaling protein-like
Q32ZL2LPPR5Lipid phosphate phosphatase-related protein type 5Chromosome-1Lipid phosphate phosphatase-related protein type 5
Q5T2N8ATAD3CATPase family AAA domain-containing protein 3CChromosome-1ATPase family AAA domain-containing protein 3C
Q96R27OR2M4Olfactory receptor 2M4Chromosome-1Olfactory receptor 2M4
Q5T752LCE1DLate cornified envelope protein 1DChromosome-1Late cornified envelope protein 1D
O00341SLC1A7Excitatory amino acid transporter 5Chromosome-1Excitatory amino acid transporter 5
Q7Z5A8FAM19A3Protein FAM19A3Chromosome-1Protein FAM19A3
Q9Y543HES2Transcription factor HES-2Chromosome-1Transcription factor HES-2
Q96PI1SPRR4Small proline-rich protein 4Chromosome-1Small proline-rich protein 4
A8MTJ6FOXI3Forkhead box protein I3Chromosome-2Forkhead box protein I3

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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