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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 121-140 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q32M84BTBD16BTB/POZ domain-containing protein 16Chromosome-10BTB/POZ domain-containing protein 16
B2RXH4BTBD18BTB/POZ domain-containing protein 18Chromosome-11BTB/POZ domain-containing protein 18
Q5XKL5BTBD8BTB/POZ domain-containing protein 8Chromosome-1BTB/POZ domain-containing protein 8
Q9UIR0BTNL2Butyrophilin-like protein 2Chromosome-6Butyrophilin-like protein 2
Q6UXE8BTNL3Butyrophilin-like protein 3Chromosome-5Butyrophilin-like protein 3
Q8NC01CLEC1AC-type lectin domain family 1 member AChromosome-12C-type lectin domain family 1 member A
Q8IUN9CLEC10AC-type lectin domain family 10 member AChromosome-17C-type lectin domain family 10 member A
Q6UXF7CLEC18BC-type lectin domain family 18 member BChromosome-16C-type lectin domain family 18 member B
Q8NCF0CLEC18CC-type lectin domain family 18 member CChromosome-16C-type lectin domain family 18 member C
Q6UXS0CLEC19AC-type lectin domain family 19 member AChromosome-16C-type lectin domain family 19 member A
Q8N1N0CLEC4FC-type lectin domain family 4 member FChromosome-2C-type lectin domain family 4 member F
Q6EIG7CLEC6AC-type lectin domain family 6 member AChromosome-12C-type lectin domain family 6 member A
Q8IZS7CLECL1C-type lectin-like domain family 1Chromosome-12C-type lectin-like domain family 1
O00574CXCR6C-X-C chemokine receptor type 6Chromosome-3C-X-C chemokine receptor type 6
Q8NCU7C2CD4AC2 calcium-dependent domain-containing protein 4AChromosome-15C2 calcium-dependent domain-containing protein 4A
A4D0V7CPED1Cadherin-like and PC-esterase domain-containing protein 1Chromosome-7Cadherin-like and PC-esterase domain-containing protein 1
Q8IXH8CDH26Cadherin-like protein 26Chromosome-20Cadherin-like protein 26
Q86XJ0CALHM3Calcium homeostasis modulator protein 3Chromosome-10Calcium homeostasis modulator protein 3
Q9BXU9CALN1Calcium-binding protein 8Chromosome-7Calcium-binding protein 8
Q96S95CAMK2N2Calcium/calmodulin-dependent protein kinase II inhibitor 2Chromosome-3Calcium/calmodulin-dependent protein kinase II inhibitor 2

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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