image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 121-140 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q8N9H6C8orf31Uncharacterized protein C8orf31Chromosome-8Uncharacterized protein C8orf31
Q99445GMLGlycosyl-phosphatidylinositol-anchored molecule-like proteinChromosome-8Glycosyl-phosphatidylinositol-anchored molecule-like protein
Q4QY38DEFB134Beta-defensin 134Chromosome-8Beta-defensin 134
Q9BYG8GSDMCGasdermin-CChromosome-8Gasdermin-C
Q9H2Y9SLCO5A1Solute carrier organic anion transporter family member 5A1Chromosome-8Solute carrier organic anion transporter family member 5A1
Q6PDA7SPAG11ASperm-associated antigen 11AChromosome-8Sperm-associated antigen 11A
Q8IZJ6TDHInactive L-threonine 3-dehydrogenase, mitochondrialChromosome-8Inactive L-threonine 3-dehydrogenase, mitochondrial
Q8N9X5TMEM75Transmembrane protein 75Chromosome-8Transmembrane protein 75
Q9P272KIAA1456Probable tRNA methyltransferase 9-like proteinChromosome-8Probable tRNA methyltransferase 9-like protein
Q68CJ6NUGGCNuclear GTPase SLIP-GCChromosome-8Nuclear GTPase SLIP-GC
A6NJ46NKX6-3Homeobox protein Nkx-6.3Chromosome-8Homeobox protein Nkx-6.3
Q92819HAS2Hyaluronan synthase 2Chromosome-8Hyaluronan synthase 2
Q6P4F1FUT10Alpha-(1,3)-fucosyltransferase 10Chromosome-8Alpha-(1,3)-fucosyltransferase 10
Q8NA66CNBD1Cyclic nucleotide-binding domain-containing protein 1Chromosome-8Cyclic nucleotide-binding domain-containing protein 1
P54219SLC18A1Chromaffin granule amine transporterChromosome-8Chromaffin granule amine transporter
Q06889EGR3Early growth response protein 3Chromosome-8Early growth response protein 3
Q8TAG6C8orf46Uncharacterized protein C8orf46Chromosome-8Uncharacterized protein C8orf46
A6NFH5FABP12Fatty acid-binding protein 12Chromosome-8Fatty acid-binding protein 12
Q96LD1SGCZZeta-sarcoglycanChromosome-8Zeta-sarcoglycan
Q6P5X7TMEM71Transmembrane protein 71Chromosome-8Transmembrane protein 71

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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