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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 101-120 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
A8MWE9EFCAB8EF-hand calcium-binding domain-containing protein 8Chromosome-20EF-hand calcium-binding domain-containing protein 8
A8MWS1KIR3DP1Putative killer cell immunoglobulin-like receptor like protein KIR3DP1Chromosome-19Putative killer cell immunoglobulin-like receptor like protein KIR3DP1
A8MXK1VSTM5V-set and transmembrane domain-containing protein 5Chromosome-11V-set and transmembrane domain-containing protein 5
A8MYJ7TTC34Tetratricopeptide repeat protein 34Chromosome-1Tetratricopeptide repeat protein 34
A8MZ59LEUTXLeucine-twenty homeoboxChromosome-19Leucine-twenty homeobox
A9Z1Z3FER1L4Fer-1-like protein 4Chromosome-20Fer-1-like protein 4
B1AL46NUTM2ENUT family member 2EChromosome-10NUT family member 2E
B1AL88FAM155ATransmembrane protein FAM155AChromosome-13Transmembrane protein FAM155A
B2RXH4BTBD18BTB/POZ domain-containing protein 18Chromosome-11BTB/POZ domain-containing protein 18
B3SHH9TMEM114Transmembrane protein 114Chromosome-16Transmembrane protein 114
B4DS77SHISA9Protein shisa-9Chromosome-16Protein shisa-9
B6A8C7TARM1T-cell-interacting, activating receptor on myeloid cells protein 1Chromosome-19T-cell-interacting, activating receptor on myeloid cells protein 1
B9ZVM9TCP10L2T-complex protein 10A homolog 2Chromosome-6T-complex protein 10A homolog 2
C9J302C4orf51Uncharacterized protein C4orf51Chromosome-4Uncharacterized protein C4orf51
C9J3V5TEX22Testis-expressed sequence 22 proteinChromosome-14Testis-expressed sequence 22 protein
C9JL84HHLA1HERV-H LTR-associating protein 1Chromosome-8HERV-H LTR-associating protein 1
C9JQI7TMEM232Transmembrane protein 232Chromosome-5Transmembrane protein 232
E2RYF7HCG22Protein PBMUCL2Chromosome-6Protein PBMUCL2
E5RQL4FTCDNL1Formiminotransferase N-terminal subdomain-containing proteinChromosome-2Formiminotransferase N-terminal subdomain-containing protein

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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