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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 101-120 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q3B7T3BEAN1Protein BEAN1Chromosome-16Protein BEAN1
Q8NDZ0BEND2BEN domain-containing protein 2Chromosome-XBEN domain-containing protein 2
Q6ZU67BEND4BEN domain-containing protein 4Chromosome-4BEN domain-containing protein 4
Q6PI77BHLHB9Protein BHLHb9Chromosome-XProtein BHLHb9
Q8NFJ8BHLHE22Class E basic helix-loop-helix protein 22Chromosome-8Class E basic helix-loop-helix protein 22
Q86UB2BIVMBasic immunoglobulin-like variable motif-containing proteinChromosome-13Basic immunoglobulin-like variable motif-containing protein
A4D250BLACEB-cell acute lymphoblastic leukemia-expressed proteinChromosome-7B-cell acute lymphoblastic leukemia-expressed protein
P22003BMP5Bone morphogenetic protein 5Chromosome-6Bone morphogenetic protein 5
Q7Z5Y6BMP8ABone morphogenetic protein 8AChromosome-1Bone morphogenetic protein 8A
Q9GZL8BPESC1Putative BPES syndrome breakpoint region proteinChromosome-3Putative BPES syndrome breakpoint region protein
P59826BPIFB3BPI fold-containing family B member 3Chromosome-20BPI fold-containing family B member 3
P59827BPIFB4BPI fold-containing family B member 4Chromosome-20BPI fold-containing family B member 4
Q3C1V8BSXBrain-specific homeobox protein homologChromosome-11Brain-specific homeobox protein homolog
Q32M84BTBD16BTB/POZ domain-containing protein 16Chromosome-10BTB/POZ domain-containing protein 16
B2RXH4BTBD18BTB/POZ domain-containing protein 18Chromosome-11BTB/POZ domain-containing protein 18
Q5XKL5BTBD8BTB/POZ domain-containing protein 8Chromosome-1BTB/POZ domain-containing protein 8
Q9NY30BTG4Protein BTG4Chromosome-11Protein BTG4
Q9UIR0BTNL2Butyrophilin-like protein 2Chromosome-6Butyrophilin-like protein 2

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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