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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 81-100 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q5FYA8ARSHArylsulfatase HChromosome-XArylsulfatase H
Q5FYB0ARSJArylsulfatase JChromosome-4Arylsulfatase J
A6NKF2ARID3CAT-rich interactive domain-containing protein 3CChromosome-9AT-rich interactive domain-containing protein 3C
Q06055ATP5G2ATP synthase F(0) complex subunit C2, mitochondrialChromosome-12ATP synthase F(0) complex subunit C2, mitochondrial
P48201ATP5G3ATP synthase F(0) complex subunit C3, mitochondrialChromosome-2ATP synthase F(0) complex subunit C3, mitochondrial
Q8WWZ4ABCA10ATP-binding cassette sub-family A member 10Chromosome-17ATP-binding cassette sub-family A member 10
Q5T2N8ATAD3CATPase family AAA domain-containing protein 3CChromosome-1ATPase family AAA domain-containing protein 3C
Q13072BAGEB melanoma antigen 1Chromosome-13B melanoma antigen 1
Q86Y30BAGE2B melanoma antigen 2Chromosome-21B melanoma antigen 2
Q86Y28BAGE4B melanoma antigen 4Chromosome-21B melanoma antigen 4
Q86Y27BAGE5B melanoma antigen 5Chromosome-13B melanoma antigen 5
A4D250BLACEB-cell acute lymphoblastic leukemia-expressed proteinChromosome-7B-cell acute lymphoblastic leukemia-expressed protein
Q9BZE3BARHL1BarH-like 1 homeobox proteinChromosome-9BarH-like 1 homeobox protein
Q86UB2BIVMBasic immunoglobulin-like variable motif-containing proteinChromosome-13Basic immunoglobulin-like variable motif-containing protein
Q8N1D0SLC22A18ASBeckwith-Wiedemann syndrome chromosomal region 1 candidate gene B proteinChromosome-11Beckwith-Wiedemann syndrome chromosomal region 1 candidate gene B protein
Q8NDZ0BEND2BEN domain-containing protein 2Chromosome-XBEN domain-containing protein 2
Q6ZU67BEND4BEN domain-containing protein 4Chromosome-4BEN domain-containing protein 4

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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