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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 81-100 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
A6NND4OR2AT4Olfactory receptor 2AT4Chromosome-11Olfactory receptor 2AT4
A6NNE9MARCH11E3 ubiquitin-protein ligase MARCH11Chromosome-5E3 ubiquitin-protein ligase MARCH11
A6NNL0NUTM2BNUT family member 2BChromosome-10NUT family member 2B
A6NNW6ENO4Enolase-like protein ENO4Chromosome-10Enolase-like protein ENO4
A6NP11ZNF716Zinc finger protein 716Chromosome-7Zinc finger protein 716
A6NP61ZAR1LZAR1-like proteinChromosome-13ZAR1-like protein
A6PVC2TTLL8Protein monoglycylase TTLL8Chromosome-22Protein monoglycylase TTLL8
A7E2F4GOLGA8AGolgin subfamily A member 8AChromosome-15Golgin subfamily A member 8A
A7E2U8C4orf47UPF0602 protein C4orf47Chromosome-4UPF0602 protein C4orf47
A8K830COLCA2Colorectal cancer-associated protein 2Chromosome-11Colorectal cancer-associated protein 2
A8MPY1GABRR3Gamma-aminobutyric acid receptor subunit rho-3Chromosome-3Gamma-aminobutyric acid receptor subunit rho-3
A8MQB3C17orf51Uncharacterized protein C17orf51Chromosome-17Uncharacterized protein C17orf51
A8MT70ZBBXZinc finger B-box domain-containing protein 1Chromosome-3Zinc finger B-box domain-containing protein 1
A8MTB9CEACAM18Carcinoembryonic antigen-related cell adhesion molecule 18Chromosome-19Carcinoembryonic antigen-related cell adhesion molecule 18
A8MTJ6FOXI3Forkhead box protein I3Chromosome-2Forkhead box protein I3
A8MTL9HMSDSerpin-like protein HMSDChromosome-18Serpin-like protein HMSD
A8MTQ0NOTOHomeobox protein notochordChromosome-2Homeobox protein notochord
A8MV65VGLL3Transcription cofactor vestigial-like protein 3Chromosome-3Transcription cofactor vestigial-like protein 3
A8MW99MEI4Meiosis-specific protein MEI4-likeChromosome-6Meiosis-specific protein MEI4-like

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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