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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 81-100 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q9NQ33ASCL3Achaete-scute homolog 3Chromosome-11Achaete-scute homolog 3
Q9C0F0ASXL3Putative Polycomb group protein ASXL3Chromosome-18Putative Polycomb group protein ASXL3
Q5T2N8ATAD3CATPase family AAA domain-containing protein 3CChromosome-1ATPase family AAA domain-containing protein 3C
Q92858ATOH1Protein atonal homolog 1Chromosome-4Protein atonal homolog 1
Q96SQ7ATOH8Protein atonal homolog 8Chromosome-2Protein atonal homolog 8
Q4VNC0ATP13A5Probable cation-transporting ATPase 13A5Chromosome-3Probable cation-transporting ATPase 13A5
Q06055ATP5G2ATP synthase F(0) complex subunit C2, mitochondrialChromosome-12ATP synthase F(0) complex subunit C2, mitochondrial
P48201ATP5G3ATP synthase F(0) complex subunit C3, mitochondrialChromosome-2ATP synthase F(0) complex subunit C3, mitochondrial
Q52LC2ATP6AP1LV-type proton ATPase subunit S1-like proteinChromosome-5V-type proton ATPase subunit S1-like protein
O15342ATP6V0E1V-type proton ATPase subunit e 1Chromosome-5V-type proton ATPase subunit e 1
Q8NHE4ATP6V0E2V-type proton ATPase subunit e 2Chromosome-7V-type proton ATPase subunit e 2
P47901AVPR1BVasopressin V1b receptorChromosome-1Vasopressin V1b receptor
Q9Y5Z6B3GALT1Beta-1,3-galactosyltransferase 1Chromosome-2Beta-1,3-galactosyltransferase 1
O43825B3GALT2Beta-1,3-galactosyltransferase 2Chromosome-1Beta-1,3-galactosyltransferase 2
O96024B3GALT4Beta-1,3-galactosyltransferase 4Chromosome-6Beta-1,3-galactosyltransferase 4
Q13072BAGEB melanoma antigen 1Chromosome-13B melanoma antigen 1
Q86Y30BAGE2B melanoma antigen 2Chromosome-21B melanoma antigen 2
Q86Y28BAGE4B melanoma antigen 4Chromosome-21B melanoma antigen 4
Q86Y27BAGE5B melanoma antigen 5Chromosome-13B melanoma antigen 5
Q9BZE3BARHL1BarH-like 1 homeobox proteinChromosome-9BarH-like 1 homeobox protein

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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