image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 81-100 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q96L03SPATA17Spermatogenesis-associated protein 17Chromosome-1Spermatogenesis-associated protein 17
Q5JQS5OR2B11Olfactory receptor 2B11Chromosome-1Olfactory receptor 2B11
Q3BBV0NBPF1Neuroblastoma breakpoint family member 1Chromosome-1Neuroblastoma breakpoint family member 1
Q6IF00OR2T2Olfactory receptor 2T2Chromosome-1Olfactory receptor 2T2
Q5T197DCST1DC-STAMP domain-containing protein 1Chromosome-1DC-STAMP domain-containing protein 1
Q02575NHLH1Helix-loop-helix protein 1Chromosome-1Helix-loop-helix protein 1
Q68G75LEMD1LEM domain-containing protein 1Chromosome-1LEM domain-containing protein 1
Q9Y543HES2Transcription factor HES-2Chromosome-1Transcription factor HES-2
Q8TDD5MCOLN3Mucolipin-3Chromosome-1Mucolipin-3
Q32ZL2LPPR5Lipid phosphate phosphatase-related protein type 5Chromosome-1Lipid phosphate phosphatase-related protein type 5
P0DMP2SRGAP2BSLIT-ROBO Rho GTPase-activating protein 2BChromosome-1SLIT-ROBO Rho GTPase-activating protein 2B
Q96PI1SPRR4Small proline-rich protein 4Chromosome-1Small proline-rich protein 4
Q9BZJ8GPR61Probable G-protein coupled receptor 61Chromosome-1Probable G-protein coupled receptor 61
Q96DD0LRRC39Leucine-rich repeat-containing protein 39Chromosome-1Leucine-rich repeat-containing protein 39
Q6PXP3SLC2A7Solute carrier family 2, facilitated glucose transporter member 7Chromosome-1Solute carrier family 2, facilitated glucose transporter member 7
Q5XKL5BTBD8BTB/POZ domain-containing protein 8Chromosome-1BTB/POZ domain-containing protein 8
P22532SPRR2DSmall proline-rich protein 2DChromosome-1Small proline-rich protein 2D
Q9HCC6HES4Transcription factor HES-4Chromosome-1Transcription factor HES-4
Q96JT2SLC45A3Solute carrier family 45 member 3Chromosome-1Solute carrier family 45 member 3
Q9Y5M6OCLMOculomedinChromosome-1Oculomedin

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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