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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 61-80 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
A6NK97SLC22A20Solute carrier family 22 member 20Chromosome-11Solute carrier family 22 member 20
A6NKB5PCNXL2Pecanex-like protein 2Chromosome-1Pecanex-like protein 2
A6NKD2TSPY2Testis-specific Y-encoded protein 2Chromosome-YTestis-specific Y-encoded protein 2
A6NKF2ARID3CAT-rich interactive domain-containing protein 3CChromosome-9AT-rich interactive domain-containing protein 3C
A6NKF7TMEM88BTransmembrane protein 88BChromosome-1Transmembrane protein 88B
A6NKQ9CGB1Choriogonadotropin subunit beta variant 1Chromosome-19Choriogonadotropin subunit beta variant 1
A6NKW6FAM159BMembrane protein FAM159BChromosome-5Membrane protein FAM159B
A6NLW8DUXADouble homeobox protein AChromosome-19Double homeobox protein A
A6NM11LRRC37A2Leucine-rich repeat-containing protein 37A2Chromosome-17Leucine-rich repeat-containing protein 37A2
A6NMB1SIGLEC16Sialic acid-binding Ig-like lectin 16Chromosome-19Sialic acid-binding Ig-like lectin 16
A6NML5TMEM212Transmembrane protein 212Chromosome-3Transmembrane protein 212
A6NMN3FAM170BPutative protein FAM170BChromosome-10Putative protein FAM170B
A6NMS7LRRC37ALeucine-rich repeat-containing protein 37AChromosome-17Leucine-rich repeat-containing protein 37A
A6NMT0DBX1Homeobox protein DBX1Chromosome-11Homeobox protein DBX1
A6NMX2EIF4E1BEukaryotic translation initiation factor 4E type 1BChromosome-5Eukaryotic translation initiation factor 4E type 1B
A6NN92GJE1Gap junction epsilon-1 proteinChromosome-6Gap junction epsilon-1 protein
A6NNA2SRRM3Serine/arginine repetitive matrix protein 3Chromosome-7Serine/arginine repetitive matrix protein 3
A6NNA5DRGXDorsal root ganglia homeobox proteinChromosome-10Dorsal root ganglia homeobox protein

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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