image source:

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 61-80 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q7LC44ARCActivity-regulated cytoskeleton-associated proteinChromosome-8Activity-regulated cytoskeleton-associated protein
A6NJG6ARGFXArginine-fifty homeoboxChromosome-3Arginine-fifty homeobox
Q3KRB8ARHGAP11BRho GTPase-activating protein 11BChromosome-15Rho GTPase-activating protein 11B
A6NKF2ARID3CAT-rich interactive domain-containing protein 3CChromosome-9AT-rich interactive domain-containing protein 3C
Q8IVW1ARL17BADP-ribosylation factor-like protein 17Chromosome-17ADP-ribosylation factor-like protein 17
Q6T311ARL9ADP-ribosylation factor-like protein 9Chromosome-4ADP-ribosylation factor-like protein 9
Q8NEN0ARMC2Armadillo repeat-containing protein 2Chromosome-6Armadillo repeat-containing protein 2
P0C7Q2ARMS2Age-related maculopathy susceptibility protein 2Chromosome-10Age-related maculopathy susceptibility protein 2
Q5FYA8ARSHArylsulfatase HChromosome-XArylsulfatase H
Q5FYB0ARSJArylsulfatase JChromosome-4Arylsulfatase J
P52961ART1GPI-linked NAD(P)(+)--arginine ADP-ribosyltransferase 1Chromosome-11GPI-linked NAD(P)(+)--arginine ADP-ribosyltransferase 1
Q96L15ART5Ecto-ADP-ribosyltransferase 5Chromosome-11Ecto-ADP-ribosyltransferase 5
A6NK59ASB14Ankyrin repeat and SOCS box protein 14Chromosome-3Ankyrin repeat and SOCS box protein 14
Q8WXK1ASB15Ankyrin repeat and SOCS box protein 15Chromosome-7Ankyrin repeat and SOCS box protein 15
Q6ZVZ8ASB18Ankyrin repeat and SOCS box protein 18Chromosome-2Ankyrin repeat and SOCS box protein 18
Q9Y574ASB4Ankyrin repeat and SOCS box protein 4Chromosome-7Ankyrin repeat and SOCS box protein 4
Q8WWX0ASB5Ankyrin repeat and SOCS box protein 5Chromosome-4Ankyrin repeat and SOCS box protein 5

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

Write to us