image source:

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 61-80 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
P0DMP2SRGAP2BSLIT-ROBO Rho GTPase-activating protein 2BChromosome-1SLIT-ROBO Rho GTPase-activating protein 2B
Q5VX52SPATA1Spermatogenesis-associated protein 1Chromosome-1Spermatogenesis-associated protein 1
Q8IZD6SLC22A15Solute carrier family 22 member 15Chromosome-1Solute carrier family 22 member 15
Q96JT2SLC45A3Solute carrier family 45 member 3Chromosome-1Solute carrier family 45 member 3
Q96M43NBPF4Neuroblastoma breakpoint family member 4Chromosome-1Neuroblastoma breakpoint family member 4
Q92637FCGR1BHigh affinity immunoglobulin gamma Fc receptor IBChromosome-1High affinity immunoglobulin gamma Fc receptor IB
Q5SWH9TMEM69Transmembrane protein 69Chromosome-1Transmembrane protein 69
Q9Y6C5PTCH2Protein patched homolog 2Chromosome-1Protein patched homolog 2
Q495T6MMEL1Membrane metallo-endopeptidase-like 1Chromosome-1Membrane metallo-endopeptidase-like 1
Q6TDP4KLHL17Kelch-like protein 17Chromosome-1Kelch-like protein 17
Q5VX71SUSD4Sushi domain-containing protein 4Chromosome-1Sushi domain-containing protein 4
Q8IZ20ZNF683Zinc finger protein 683Chromosome-1Zinc finger protein 683
Q12836ZP4Zona pellucida sperm-binding protein 4Chromosome-1Zona pellucida sperm-binding protein 4
A6NKB5PCNXL2Pecanex-like protein 2Chromosome-1Pecanex-like protein 2
Q8N0U2TMEM61Transmembrane protein 61Chromosome-1Transmembrane protein 61
Q9NXI6RNF186RING finger protein 186Chromosome-1RING finger protein 186
Q6P3W6NBPF10Neuroblastoma breakpoint family member 10Chromosome-1Neuroblastoma breakpoint family member 10
Q8NDV1ST6GALNAC3Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3Chromosome-1Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
Q9BYE4SPRR2GSmall proline-rich protein 2GChromosome-1Small proline-rich protein 2G

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

Write to us