image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 61-80 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
O60548FOXD2Forkhead box protein D2Chromosome-1Forkhead box protein D2
Q8WZ79DNASE2BDeoxyribonuclease-2-betaChromosome-1Deoxyribonuclease-2-beta
Q5VZ19TDRD10Tudor domain-containing protein 10Chromosome-1Tudor domain-containing protein 10
Q6P3W6NBPF10Neuroblastoma breakpoint family member 10Chromosome-1Neuroblastoma breakpoint family member 10
Q8NBF1GLIS1Zinc finger protein GLIS1Chromosome-1Zinc finger protein GLIS1
Q9H094NBPF3Neuroblastoma breakpoint family member 3Chromosome-1Neuroblastoma breakpoint family member 3
Q8NH03OR2T3Olfactory receptor 2T3Chromosome-1Olfactory receptor 2T3
Q5VU57AGBL4Cytosolic carboxypeptidase 6Chromosome-1Cytosolic carboxypeptidase 6
A6NKB5PCNXL2Pecanex-like protein 2Chromosome-1Pecanex-like protein 2
Q5TID7CCDC181Coiled-coil domain-containing protein 181Chromosome-1Coiled-coil domain-containing protein 181
Q5R387PLA2G2CPutative inactive group IIC secretory phospholipase A2Chromosome-1Putative inactive group IIC secretory phospholipase A2
Q92535PIGCPhosphatidylinositol N-acetylglucosaminyltransferase subunit CChromosome-1Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
Q8NHC4OR10J5Olfactory receptor 10J5Chromosome-1Olfactory receptor 10J5
Q5TA76LCE3ALate cornified envelope protein 3AChromosome-1Late cornified envelope protein 3A
Q92637FCGR1BHigh affinity immunoglobulin gamma Fc receptor IBChromosome-1High affinity immunoglobulin gamma Fc receptor IB
Q8NGY3OR6K3Olfactory receptor 6K3Chromosome-1Olfactory receptor 6K3
Q8NGY1OR10Z1Olfactory receptor 10Z1Chromosome-1Olfactory receptor 10Z1
Q5SWH9TMEM69Transmembrane protein 69Chromosome-1Transmembrane protein 69
Q495T6MMEL1Membrane metallo-endopeptidase-like 1Chromosome-1Membrane metallo-endopeptidase-like 1
Q8NGY9OR2L8Olfactory receptor 2L8Chromosome-1Olfactory receptor 2L8

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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