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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 41-60 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
A6NGK3GAGE10G antigen 10Chromosome-XG antigen 10
A6NGQ2OOEPOocyte-expressed protein homologChromosome-6Oocyte-expressed protein homolog
A6NGY1FRG2CProtein FRG2-like-2Chromosome-3Protein FRG2-like-2
A6NGY5OR51F1Olfactory receptor 51F1Chromosome-11Olfactory receptor 51F1
A6NHG4DDTLD-dopachrome decarboxylase-like proteinChromosome-22D-dopachrome decarboxylase-like protein
A6NHJ4ZNF860Zinc finger protein 860Chromosome-3Zinc finger protein 860
A6NI56CCDC154Coiled-coil domain-containing protein 154Chromosome-16Coiled-coil domain-containing protein 154
A6NI61TMEM8CProtein myomakerChromosome-9Protein myomaker
A6NIM6SLC15A5Solute carrier family 15 member 5Chromosome-12Solute carrier family 15 member 5
A6NIV6LRRIQ4Leucine-rich repeat and IQ domain-containing protein 4Chromosome-3Leucine-rich repeat and IQ domain-containing protein 4
A6NJ46NKX6-3Homeobox protein Nkx-6.3Chromosome-8Homeobox protein Nkx-6.3
A6NJ69IGIPIgA-inducing protein homologChromosome-5IgA-inducing protein homolog
A6NJG6ARGFXArginine-fifty homeoboxChromosome-3Arginine-fifty homeobox
A6NJT0UNCXHomeobox protein unc-4 homologChromosome-7Homeobox protein unc-4 homolog
A6NJW4LRRC3CLeucine-rich repeat-containing protein 3CChromosome-17Leucine-rich repeat-containing protein 3C
A6NK59ASB14Ankyrin repeat and SOCS box protein 14Chromosome-3Ankyrin repeat and SOCS box protein 14
A6NK75ZNF98Zinc finger protein 98Chromosome-19Zinc finger protein 98
A6NK89RASSF10Ras association domain-containing protein 10Chromosome-11Ras association domain-containing protein 10

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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