image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 41-60 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q8N6M9ZFAND2AAN1-type zinc finger protein 2AChromosome-7AN1-type zinc finger protein 2A
Q86XD8ZFAND4AN1-type zinc finger protein 4Chromosome-10AN1-type zinc finger protein 4
Q8N7X0ADGBAndroglobinChromosome-6Androglobin
Q86XS5ANGPTL5Angiopoietin-related protein 5Chromosome-11Angiopoietin-related protein 5
Q96Q91SLC4A9Anion exchange protein 4Chromosome-5Anion exchange protein 4
Q7Z5J8ANKARAnkyrin and armadillo repeat-containing proteinChromosome-2Ankyrin and armadillo repeat-containing protein
Q495B1ANKDD1AAnkyrin repeat and death domain-containing protein 1AChromosome-15Ankyrin repeat and death domain-containing protein 1A
Q8N957ANKFN1Ankyrin repeat and fibronectin type-III domain-containing protein 1Chromosome-17Ankyrin repeat and fibronectin type-III domain-containing protein 1
Q8NFD2ANKK1Ankyrin repeat and protein kinase domain-containing protein 1Chromosome-11Ankyrin repeat and protein kinase domain-containing protein 1
A6NK59ASB14Ankyrin repeat and SOCS box protein 14Chromosome-3Ankyrin repeat and SOCS box protein 14
Q8WXK1ASB15Ankyrin repeat and SOCS box protein 15Chromosome-7Ankyrin repeat and SOCS box protein 15
Q6ZVZ8ASB18Ankyrin repeat and SOCS box protein 18Chromosome-2Ankyrin repeat and SOCS box protein 18
Q9Y574ASB4Ankyrin repeat and SOCS box protein 4Chromosome-7Ankyrin repeat and SOCS box protein 4
Q8WWX0ASB5Ankyrin repeat and SOCS box protein 5Chromosome-4Ankyrin repeat and SOCS box protein 5
Q8IVF6ANKRD18AAnkyrin repeat domain-containing protein 18AChromosome-9Ankyrin repeat domain-containing protein 18A
Q5TYW2ANKRD20A1Ankyrin repeat domain-containing protein 20A1Chromosome-9Ankyrin repeat domain-containing protein 20A1
Q7Z3H0ANKRD33Ankyrin repeat domain-containing protein 33Chromosome-12Ankyrin repeat domain-containing protein 33
A5PLL1ANKRD34BAnkyrin repeat domain-containing protein 34BChromosome-5Ankyrin repeat domain-containing protein 34B
Q7Z713ANKRD37Ankyrin repeat domain-containing protein 37Chromosome-4Ankyrin repeat domain-containing protein 37
Q8N9V6ANKRD53Ankyrin repeat domain-containing protein 53Chromosome-2Ankyrin repeat domain-containing protein 53

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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