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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 41-60 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
P22532SPRR2DSmall proline-rich protein 2DChromosome-1Small proline-rich protein 2D
Q5JVX7C1orf141Uncharacterized protein C1orf141Chromosome-1Uncharacterized protein C1orf141
Q8NG84OR2AK2Olfactory receptor 2AK2Chromosome-1Olfactory receptor 2AK2
Q6TCH4PAQR6Progestin and adipoQ receptor family member 6Chromosome-1Progestin and adipoQ receptor family member 6
Q13536C1orf61Protein CROC-4Chromosome-1Protein CROC-4
Q9BZJ8GPR61Probable G-protein coupled receptor 61Chromosome-1Probable G-protein coupled receptor 61
Q5T1N1AKNAD1Protein AKNAD1Chromosome-1Protein AKNAD1
Q9P1Z3HCN3Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3Chromosome-1Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3
Q6UY18LINGO4Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4Chromosome-1Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4
Q9HCC6HES4Transcription factor HES-4Chromosome-1Transcription factor HES-4
Q5VTH9WDR78WD repeat-containing protein 78Chromosome-1WD repeat-containing protein 78
Q8NGZ3OR13G1Olfactory receptor 13G1Chromosome-1Olfactory receptor 13G1
Q96SC8DMRTA2Doublesex- and mab-3-related transcription factor A2Chromosome-1Doublesex- and mab-3-related transcription factor A2
Q5VVM6CCDC30Coiled-coil domain-containing protein 30Chromosome-1Coiled-coil domain-containing protein 30
P57773GJA9Gap junction alpha-9 proteinChromosome-1Gap junction alpha-9 protein
Q5UAW9GPR157Probable G-protein coupled receptor 157Chromosome-1Probable G-protein coupled receptor 157
Q5TA89HES5Transcription factor HES-5Chromosome-1Transcription factor HES-5
Q92535PIGCPhosphatidylinositol N-acetylglucosaminyltransferase subunit CChromosome-1Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
Q7Z572SPATA21Spermatogenesis-associated protein 21Chromosome-1Spermatogenesis-associated protein 21
O60811PRAMEF2PRAME family member 2Chromosome-1PRAME family member 2

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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