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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 21-40 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q8IVW1ARL17BADP-ribosylation factor-like protein 17Chromosome-17ADP-ribosylation factor-like protein 17
Q6T311ARL9ADP-ribosylation factor-like protein 9Chromosome-4ADP-ribosylation factor-like protein 9
P0C7Q2ARMS2Age-related maculopathy susceptibility protein 2Chromosome-10Age-related maculopathy susceptibility protein 2
P48448ALDH3B2Aldehyde dehydrogenase family 3 member B2Chromosome-11Aldehyde dehydrogenase family 3 member B2
Q8TDN7ACER1Alkaline ceramidase 1Chromosome-19Alkaline ceramidase 1
Q6P4F1FUT10Alpha-(1,3)-fucosyltransferase 10Chromosome-8Alpha-(1,3)-fucosyltransferase 10
Q11128FUT5Alpha-(1,3)-fucosyltransferase 5Chromosome-19Alpha-(1,3)-fucosyltransferase 5
Q9UBM8MGAT4CAlpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase CChromosome-12Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
P25100ADRA1DAlpha-1D adrenergic receptorChromosome-20Alpha-1D adrenergic receptor
Q92186ST8SIA2Alpha-2,8-sialyltransferase 8BChromosome-15Alpha-2,8-sialyltransferase 8B
P18825ADRA2CAlpha-2C adrenergic receptorChromosome-4Alpha-2C adrenergic receptor
Q8NDV1ST6GALNAC3Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3Chromosome-1Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
Q86TB3ALPK2Alpha-protein kinase 2Chromosome-18Alpha-protein kinase 2
Q99218AMELYAmelogenin, Y isoformChromosome-YAmelogenin, Y isoform
Q86WK7AMIGO3Amphoterin-induced protein 3Chromosome-3Amphoterin-induced protein 3

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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