image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 21-40 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
A5PLL1ANKRD34BAnkyrin repeat domain-containing protein 34BChromosome-5Ankyrin repeat domain-containing protein 34B
A5PLN7FAM149AProtein FAM149AChromosome-4Protein FAM149A
A6BM72MEGF11Multiple epidermal growth factor-like domains protein 11Chromosome-15Multiple epidermal growth factor-like domains protein 11
A6NC42DPPA5Developmental pluripotency-associated 5 proteinChromosome-6Developmental pluripotency-associated 5 protein
A6NC51TMEM150BTransmembrane protein 150BChromosome-19Transmembrane protein 150B
A6NCE7MAP1LC3B2Microtubule-associated proteins 1A/1B light chain 3 beta 2Chromosome-12Microtubule-associated proteins 1A/1B light chain 3 beta 2
A6NCF5KLHL33Kelch-like protein 33Chromosome-14Kelch-like protein 33
A6NCI4VWA3Avon Willebrand factor A domain-containing protein 3AChromosome-16von Willebrand factor A domain-containing protein 3A
A6NCL1GMNCGeminin coiled-coil domain-containing protein 1Chromosome-3Geminin coiled-coil domain-containing protein 1
A6NDD5SYNDIG1LSynapse differentiation-inducing gene protein 1-likeChromosome-14Synapse differentiation-inducing gene protein 1-like
A6NE01FAM186AProtein FAM186AChromosome-12Protein FAM186A
A6NF34ANTXRLAnthrax toxin receptor-likeChromosome-10Anthrax toxin receptor-like
A6NF83NUPR1LNuclear transcriptional regulator 1-like proteinChromosome-7Nuclear transcriptional regulator 1-like protein
A6NFC5TMEM235Transmembrane protein 235Chromosome-17Transmembrane protein 235
A6NFD8HELTHairy and enhancer of split-related protein HELTChromosome-4Hairy and enhancer of split-related protein HELT
A6NFH5FABP12Fatty acid-binding protein 12Chromosome-8Fatty acid-binding protein 12
A6NFK2GRXCR2Glutaredoxin domain-containing cysteine-rich protein 2Chromosome-5Glutaredoxin domain-containing cysteine-rich protein 2
A6NFQ7DPRXDivergent paired-related homeoboxChromosome-19Divergent paired-related homeobox
A6NFX1MFSD2BMajor facilitator superfamily domain-containing protein 2BChromosome-2Major facilitator superfamily domain-containing protein 2B
A6NGG3C9orf92Putative uncharacterized protein C9orf92Chromosome-9Putative uncharacterized protein C9orf92

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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