image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 21-40 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q9NXI6RNF186RING finger protein 186Chromosome-1RING finger protein 186
Q9P1Z3HCN3Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3Chromosome-1Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3
Q96R27OR2M4Olfactory receptor 2M4Chromosome-1Olfactory receptor 2M4
Q13536C1orf61Protein CROC-4Chromosome-1Protein CROC-4
O14921RGS13Regulator of G-protein signaling 13Chromosome-1Regulator of G-protein signaling 13
Q4KMZ8NKAIN1Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1Chromosome-1Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1
Q5T089MORN1MORN repeat-containing protein 1Chromosome-1MORN repeat-containing protein 1
Q5TAH2SLC9C2Sodium/hydrogen exchanger 11Chromosome-1Sodium/hydrogen exchanger 11
P63135ERVK-7Endogenous retrovirus group K member 7 Pol proteinChromosome-1Endogenous retrovirus group K member 7 Pol protein
Q6NV75GPR153Probable G-protein coupled receptor 153Chromosome-1Probable G-protein coupled receptor 153
Q9NUC0SERTAD4SERTA domain-containing protein 4Chromosome-1SERTA domain-containing protein 4
Q8WW27APOBEC4Putative C->U-editing enzyme APOBEC-4Chromosome-1Putative C->U-editing enzyme APOBEC-4
A6NKF7TMEM88BTransmembrane protein 88BChromosome-1Transmembrane protein 88B
Q5UAW9GPR157Probable G-protein coupled receptor 157Chromosome-1Probable G-protein coupled receptor 157
Q96PS8AQP10Aquaporin-10Chromosome-1Aquaporin-10
Q5T1N1AKNAD1Protein AKNAD1Chromosome-1Protein AKNAD1
Q7Z5Y6BMP8ABone morphogenetic protein 8AChromosome-1Bone morphogenetic protein 8A
Q6TCH4PAQR6Progestin and adipoQ receptor family member 6Chromosome-1Progestin and adipoQ receptor family member 6
Q12836ZP4Zona pellucida sperm-binding protein 4Chromosome-1Zona pellucida sperm-binding protein 4
Q9BYE3LCE3DLate cornified envelope protein 3DChromosome-1Late cornified envelope protein 3D

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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