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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 261-280 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
P17039ZNF30Zinc finger protein 30Chromosome-19Zinc finger protein 30
P17538CTRB1Chymotrypsinogen BChromosome-16Chymotrypsinogen B
P17658KCNA6Potassium voltage-gated channel subfamily A member 6Chromosome-12Potassium voltage-gated channel subfamily A member 6
P18825ADRA2CAlpha-2C adrenergic receptorChromosome-4Alpha-2C adrenergic receptor
P20264POU3F3POU domain, class 3, transcription factor 3Chromosome-2POU domain, class 3, transcription factor 3
P20853CYP2A7Cytochrome P450 2A7Chromosome-19Cytochrome P450 2A7
P22003BMP5Bone morphogenetic protein 5Chromosome-6Bone morphogenetic protein 5
P22532SPRR2DSmall proline-rich protein 2DChromosome-1Small proline-rich protein 2D
P22794EVI2AProtein EVI2AChromosome-17Protein EVI2A
P23416GLRA2Glycine receptor subunit alpha-2Chromosome-XGlycine receptor subunit alpha-2
P24046GABRR1Gamma-aminobutyric acid receptor subunit rho-1Chromosome-6Gamma-aminobutyric acid receptor subunit rho-1
P25021HRH2Histamine H2 receptorChromosome-5Histamine H2 receptor
P25089FPR3N-formyl peptide receptor 3Chromosome-19N-formyl peptide receptor 3
P25100ADRA1DAlpha-1D adrenergic receptorChromosome-20Alpha-1D adrenergic receptor
P28476GABRR2Gamma-aminobutyric acid receptor subunit rho-2Chromosome-6Gamma-aminobutyric acid receptor subunit rho-2
P29275ADORA2BAdenosine receptor A2bChromosome-17Adenosine receptor A2b
P30939HTR1F5-hydroxytryptamine receptor 1FChromosome-35-hydroxytryptamine receptor 1F
P30953OR1E1Olfactory receptor 1E1Chromosome-17Olfactory receptor 1E1
P31267HOXA6Homeobox protein Hox-A6Chromosome-7Homeobox protein Hox-A6
P31268HOXA7Homeobox protein Hox-A7Chromosome-7Homeobox protein Hox-A7

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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