image source:

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 261-280 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
A6NNE9MARCH11E3 ubiquitin-protein ligase MARCH11Chromosome-5E3 ubiquitin-protein ligase MARCH11
Q86UD3MARCH3E3 ubiquitin-protein ligase MARCH3Chromosome-5E3 ubiquitin-protein ligase MARCH3
Q9P2E8MARCH4E3 ubiquitin-protein ligase MARCH4Chromosome-2E3 ubiquitin-protein ligase MARCH4
O76050NEURL1E3 ubiquitin-protein ligase NEURL1Chromosome-10E3 ubiquitin-protein ligase NEURL1
Q86T96RNF180E3 ubiquitin-protein ligase RNF180Chromosome-5E3 ubiquitin-protein ligase RNF180
Q8N7E2ZNF645E3 ubiquitin-protein ligase ZNF645Chromosome-XE3 ubiquitin-protein ligase ZNF645
Q06889EGR3Early growth response protein 3Chromosome-8Early growth response protein 3
Q05215EGR4Early growth response protein 4Chromosome-2Early growth response protein 4
Q96L15ART5Ecto-ADP-ribosyltransferase 5Chromosome-11Ecto-ADP-ribosyltransferase 5
Q9BUY7EFCAB11EF-hand calcium-binding domain-containing protein 11Chromosome-14EF-hand calcium-binding domain-containing protein 11
Q8IY85EFCAB13EF-hand calcium-binding domain-containing protein 13Chromosome-17EF-hand calcium-binding domain-containing protein 13
A8MWE9EFCAB8EF-hand calcium-binding domain-containing protein 8Chromosome-20EF-hand calcium-binding domain-containing protein 8
Q1W209ESRGEmbryonic stem cell-related gene proteinChromosome-3Embryonic stem cell-related gene protein
P0CF75EBLN1Endogenous Bornavirus-like nucleoprotein 1Chromosome-10Endogenous Bornavirus-like nucleoprotein 1
Q6P2I7EBLN2Endogenous Bornavirus-like nucleoprotein 2Chromosome-3Endogenous Bornavirus-like nucleoprotein 2
P10266ERVK-10Endogenous retrovirus group K member 10 Pol proteinChromosome-5Endogenous retrovirus group K member 10 Pol protein
P61566ERVK-24Endogenous retrovirus group K member 24 Env polyproteinChromosome-22Endogenous retrovirus group K member 24 Env polyprotein
Q9HDB8ERVK-5Endogenous retrovirus group K member 5 Env polyproteinChromosome-3Endogenous retrovirus group K member 5 Env polyprotein
P63135ERVK-7Endogenous retrovirus group K member 7 Pol proteinChromosome-1Endogenous retrovirus group K member 7 Pol protein
A6NNW6ENO4Enolase-like protein ENO4Chromosome-10Enolase-like protein ENO4

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

Write to us