image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 261-280 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q86V71ZNF429Zinc finger protein 429Chromosome-19Zinc finger protein 429
A6NMB1SIGLEC16Sialic acid-binding Ig-like lectin 16Chromosome-19Sialic acid-binding Ig-like lectin 16
Q8NGA8OR4F17Olfactory receptor 4F17Chromosome-19Olfactory receptor 4F17
Q6ZN11ZNF793Zinc finger protein 793Chromosome-19Zinc finger protein 793
Q86XU0ZNF677Zinc finger protein 677Chromosome-19Zinc finger protein 677
Q8N907DAND5DAN domain family member 5Chromosome-19DAN domain family member 5
O00295TULP2Tubby-related protein 2Chromosome-19Tubby-related protein 2
Q8NHK3KIR2DL5BKiller cell immunoglobulin-like receptor 2DL5BChromosome-19Killer cell immunoglobulin-like receptor 2DL5B
Q8N743KIR3DL3Killer cell immunoglobulin-like receptor 3DL3Chromosome-19Killer cell immunoglobulin-like receptor 3DL3
P17021ZNF17Zinc finger protein 17Chromosome-19Zinc finger protein 17
Q96ND8ZNF583Zinc finger protein 583Chromosome-19Zinc finger protein 583
A8MTB9CEACAM18Carcinoembryonic antigen-related cell adhesion molecule 18Chromosome-19Carcinoembryonic antigen-related cell adhesion molecule 18
Q68DY1ZNF626Zinc finger protein 626Chromosome-19Zinc finger protein 626
Q14943KIR3DS1Killer cell immunoglobulin-like receptor 3DS1Chromosome-19Killer cell immunoglobulin-like receptor 3DS1
B6A8C7TARM1T-cell-interacting, activating receptor on myeloid cells protein 1Chromosome-19T-cell-interacting, activating receptor on myeloid cells protein 1
Q9Y2Q1ZNF257Zinc finger protein 257Chromosome-19Zinc finger protein 257
Q6IFN5OR7E24Olfactory receptor 7E24Chromosome-19Olfactory receptor 7E24
P48664SLC1A6Excitatory amino acid transporter 4Chromosome-19Excitatory amino acid transporter 4
A6NK75ZNF98Zinc finger protein 98Chromosome-19Zinc finger protein 98
Q9HBJ7USP29Ubiquitin carboxyl-terminal hydrolase 29Chromosome-19Ubiquitin carboxyl-terminal hydrolase 29

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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