image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 241-260 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
O75388GPR32Probable G-protein coupled receptor 32Chromosome-19Probable G-protein coupled receptor 32
Q6NT52CGB2Choriogonadotropin subunit beta variant 2Chromosome-19Choriogonadotropin subunit beta variant 2
Q9H7M6ZSWIM4Zinc finger SWIM domain-containing protein 4Chromosome-19Zinc finger SWIM domain-containing protein 4
Q96N58ZNF578Zinc finger protein 578Chromosome-19Zinc finger protein 578
Q96SR6ZNF382Zinc finger protein 382Chromosome-19Zinc finger protein 382
Q9BSK1ZNF577Zinc finger protein 577Chromosome-19Zinc finger protein 577
Q8WTR8NTN5Netrin-5Chromosome-19Netrin-5
Q8N972ZNF709Zinc finger protein 709Chromosome-19Zinc finger protein 709
Q3KPI0CEACAM21Carcinoembryonic antigen-related cell adhesion molecule 21Chromosome-19Carcinoembryonic antigen-related cell adhesion molecule 21
O00110OVOL3Putative transcription factor ovo-like protein 3Chromosome-19Putative transcription factor ovo-like protein 3
Q8N5S1SLC25A41Solute carrier family 25 member 41Chromosome-19Solute carrier family 25 member 41
Q15622OR7A5Olfactory receptor 7A5Chromosome-19Olfactory receptor 7A5
Q3SY52ZIK1Zinc finger protein interacting with ribonucleoprotein KChromosome-19Zinc finger protein interacting with ribonucleoprotein K
Q96N38ZNF714Zinc finger protein 714Chromosome-19Zinc finger protein 714
Q8NHZ7MBD3L2Methyl-CpG-binding domain protein 3-like 2Chromosome-19Methyl-CpG-binding domain protein 3-like 2
P10072HKR1Krueppel-related zinc finger protein 1Chromosome-19Krueppel-related zinc finger protein 1
O00321ETV2ETS translocation variant 2Chromosome-19ETS translocation variant 2
Q14954KIR2DS1Killer cell immunoglobulin-like receptor 2DS1Chromosome-19Killer cell immunoglobulin-like receptor 2DS1
Q8N8J6ZNF615Zinc finger protein 615Chromosome-19Zinc finger protein 615
Q96NG5ZNF558Zinc finger protein 558Chromosome-19Zinc finger protein 558

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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