image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 221-240 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
A6NHG4DDTLD-dopachrome decarboxylase-like proteinChromosome-22D-dopachrome decarboxylase-like protein
Q96NX9DACH2Dachshund homolog 2Chromosome-XDachshund homolog 2
Q8N907DAND5DAN domain family member 5Chromosome-19DAN domain family member 5
Q5SW24DACT2Dapper homolog 2Chromosome-6Dapper homolog 2
Q5T197DCST1DC-STAMP domain-containing protein 1Chromosome-1DC-STAMP domain-containing protein 1
Q5T1A1DCST2DC-STAMP domain-containing protein 2Chromosome-1DC-STAMP domain-containing protein 2
Q5VW00DCAF12L2DDB1- and CUL4-associated factor 12-like protein 2Chromosome-XDDB1- and CUL4-associated factor 12-like protein 2
Q6ZMT9DTHD1Death domain-containing protein 1Chromosome-4Death domain-containing protein 1
A0PJE2DHRS12Dehydrogenase/reductase SDR family member 12Chromosome-13Dehydrogenase/reductase SDR family member 12
Q6PKH6DHRS4L2Dehydrogenase/reductase SDR family member 4-like 2Chromosome-14Dehydrogenase/reductase SDR family member 4-like 2
Q9P2X7DEC1Deleted in esophageal cancer 1Chromosome-9Deleted in esophageal cancer 1
Q9Y238DLEC1Deleted in lung and esophageal cancer protein 1Chromosome-3Deleted in lung and esophageal cancer protein 1
Q8WZ79DNASE2BDeoxyribonuclease-2-betaChromosome-1Deoxyribonuclease-2-beta
Q8N2C3DEPDC4DEP domain-containing protein 4Chromosome-12DEP domain-containing protein 4
A6NC42DPPA5Developmental pluripotency-associated 5 proteinChromosome-6Developmental pluripotency-associated 5 protein
Q6W0C5DPPA3Developmental pluripotency-associated protein 3Chromosome-12Developmental pluripotency-associated protein 3
O95424DEXIDexamethasone-induced proteinChromosome-16Dexamethasone-induced protein
Q6ZPD8DGAT2L6Diacylglycerol O-acyltransferase 2-like protein 6Chromosome-XDiacylglycerol O-acyltransferase 2-like protein 6
O43506ADAM20Disintegrin and metalloproteinase domain-containing protein 20Chromosome-14Disintegrin and metalloproteinase domain-containing protein 20
Q9UKJ8ADAM21Disintegrin and metalloproteinase domain-containing protein 21Chromosome-14Disintegrin and metalloproteinase domain-containing protein 21

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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