image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 221-240 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
A8MWS1KIR3DP1Putative killer cell immunoglobulin-like receptor like protein KIR3DP1Chromosome-19Putative killer cell immunoglobulin-like receptor like protein KIR3DP1
Q13106ZNF154Zinc finger protein 154Chromosome-19Zinc finger protein 154
Q6RUI8C19orf48Uncharacterized protein C19orf48Chromosome-19Uncharacterized protein C19orf48
O60542PSPNPersephinChromosome-19Persephin
Q96MR9ZNF560Zinc finger protein 560Chromosome-19Zinc finger protein 560
Q9UK12ZNF222Zinc finger protein 222Chromosome-19Zinc finger protein 222
Q7RTR0NLRP9NACHT, LRR and PYD domains-containing protein 9Chromosome-19NACHT, LRR and PYD domains-containing protein 9
Q7Z5J1HSD11B1LHydroxysteroid 11-beta-dehydrogenase 1-like proteinChromosome-19Hydroxysteroid 11-beta-dehydrogenase 1-like protein
Q6ZN01MAMSTRMEF2-activating motif and SAP domain-containing transcriptional regulatorChromosome-19MEF2-activating motif and SAP domain-containing transcriptional regulator
Q8WWY6MBD3L1Methyl-CpG-binding domain protein 3-like 1Chromosome-19Methyl-CpG-binding domain protein 3-like 1
Q8N109KIR2DL5AKiller cell immunoglobulin-like receptor 2DL5AChromosome-19Killer cell immunoglobulin-like receptor 2DL5A
Q6ECI4ZNF470Zinc finger protein 470Chromosome-19Zinc finger protein 470
Q2VY69ZNF284Zinc finger protein 284Chromosome-19Zinc finger protein 284
Q7Z5H5VN1R4Vomeronasal type-1 receptor 4Chromosome-19Vomeronasal type-1 receptor 4
Q8NB42ZNF527Zinc finger protein 527Chromosome-19Zinc finger protein 527
P62955CACNG7Voltage-dependent calcium channel gamma-7 subunitChromosome-19Voltage-dependent calcium channel gamma-7 subunit
Q4G0G5SCGB2B2Secretoglobin family 2B member 2Chromosome-19Secretoglobin family 2B member 2
A6NKQ9CGB1Choriogonadotropin subunit beta variant 1Chromosome-19Choriogonadotropin subunit beta variant 1
Q6ZN06ZNF813Zinc finger protein 813Chromosome-19Zinc finger protein 813
P46093GPR4G-protein coupled receptor 4Chromosome-19G-protein coupled receptor 4

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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