image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 201-220 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
O95411TIAF1TGFB1-induced anti-apoptotic factor 1Chromosome-17TGFB1-induced anti-apoptotic factor 1
O95424DEXIDexamethasone-induced proteinChromosome-16Dexamethasone-induced protein
O95803NDST3Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3Chromosome-4Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
O95838GLP2RGlucagon-like peptide 2 receptorChromosome-17Glucagon-like peptide 2 receptor
O95918OR2H2Olfactory receptor 2H2Chromosome-6Olfactory receptor 2H2
O95922TTLL1Probable tubulin polyglutamylase TTLL1Chromosome-22Probable tubulin polyglutamylase TTLL1
O96004HAND1Heart- and neural crest derivatives-expressed protein 1Chromosome-5Heart- and neural crest derivatives-expressed protein 1
O96024B3GALT4Beta-1,3-galactosyltransferase 4Chromosome-6Beta-1,3-galactosyltransferase 4
P04808RLN1Prorelaxin H1Chromosome-9Prorelaxin H1
P05015IFNA16Interferon alpha-16Chromosome-9Interferon alpha-16
P08173CHRM4Muscarinic acetylcholine receptor M4Chromosome-11Muscarinic acetylcholine receptor M4
P08912CHRM5Muscarinic acetylcholine receptor M5Chromosome-15Muscarinic acetylcholine receptor M5
P09131SLC10A3P3 proteinChromosome-XP3 protein
P0C025NUDT17Nucleoside diphosphate-linked moiety X motif 17Chromosome-1Nucleoside diphosphate-linked moiety X motif 17
P0C091FREM3FRAS1-related extracellular matrix protein 3Chromosome-4FRAS1-related extracellular matrix protein 3
P0C0P6NPSNeuropeptide SChromosome-10Neuropeptide S
P0C1S8WEE2Wee1-like protein kinase 2Chromosome-7Wee1-like protein kinase 2
P0C2S0CTXN2Cortexin-2Chromosome-15Cortexin-2
P0C5K7CT62Cancer/testis antigen 62Chromosome-15Cancer/testis antigen 62
P0C5Y4KRTAP1-4Keratin-associated protein 1-4Chromosome-17Keratin-associated protein 1-4

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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