image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 181-200 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q3MJ40CCDC144BCoiled-coil domain-containing protein 144BChromosome-17Coiled-coil domain-containing protein 144B
A6NI56CCDC154Coiled-coil domain-containing protein 154Chromosome-16Coiled-coil domain-containing protein 154
A2VCL2CCDC162PCoiled-coil domain-containing protein 162Chromosome-6Coiled-coil domain-containing protein 162
Q6TFL3CCDC171Coiled-coil domain-containing protein 171Chromosome-9Coiled-coil domain-containing protein 171
Q5BJE1CCDC178Coiled-coil domain-containing protein 178Chromosome-18Coiled-coil domain-containing protein 178
Q5TID7CCDC181Coiled-coil domain-containing protein 181Chromosome-1Coiled-coil domain-containing protein 181
Q9BQI4CCDC3Coiled-coil domain-containing protein 3Chromosome-10Coiled-coil domain-containing protein 3
Q5VVM6CCDC30Coiled-coil domain-containing protein 30Chromosome-1Coiled-coil domain-containing protein 30
Q494V2CCDC37Coiled-coil domain-containing protein 37Chromosome-3Coiled-coil domain-containing protein 37
Q502W7CCDC38Coiled-coil domain-containing protein 38Chromosome-12Coiled-coil domain-containing protein 38
Q8IWF9CCDC83Coiled-coil domain-containing protein 83Chromosome-11Coiled-coil domain-containing protein 83
Q86UF4C1orf110Coiled-coil domain-containing protein C1orf110Chromosome-1Coiled-coil domain-containing protein C1orf110
Q6ZS62COLCA1Colorectal cancer-associated protein 1Chromosome-11Colorectal cancer-associated protein 1
A8K830COLCA2Colorectal cancer-associated protein 2Chromosome-11Colorectal cancer-associated protein 2
P0C2S0CTXN2Cortexin-2Chromosome-15Cortexin-2
Q4LDR2CTXN3Cortexin-3Chromosome-5Cortexin-3
O00230CORTCortistatinChromosome-1Cortistatin
Q8N123CPXCR1CPX chromosomal region candidate gene 1 proteinChromosome-XCPX chromosomal region candidate gene 1 protein
P0CG36CFC1BCryptic family protein 1BChromosome-2Cryptic family protein 1B
Q5VXM1CDCP2CUB domain-containing protein 2Chromosome-1CUB domain-containing protein 2

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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