image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 181-200 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
O75343GUCY1B2Guanylate cyclase soluble subunit beta-2Chromosome-13Guanylate cyclase soluble subunit beta-2
O75346ZNF253Zinc finger protein 253Chromosome-19Zinc finger protein 253
O75373ZNF737Zinc finger protein 737Chromosome-19Zinc finger protein 737
O75388GPR32Probable G-protein coupled receptor 32Chromosome-19Probable G-protein coupled receptor 32
O75437ZNF254Zinc finger protein 254Chromosome-19Zinc finger protein 254
O75474FRAT2GSK-3-binding protein FRAT2Chromosome-10GSK-3-binding protein FRAT2
O75677RFPL1Ret finger protein-like 1Chromosome-22Ret finger protein-like 1
O75678RFPL2Ret finger protein-like 2Chromosome-22Ret finger protein-like 2
O75840KLF7Krueppel-like factor 7Chromosome-2Krueppel-like factor 7
O76001OR2J3Olfactory receptor 2J3Chromosome-6Olfactory receptor 2J3
O76014KRT37Keratin, type I cuticular Ha7Chromosome-17Keratin, type I cuticular Ha7
O76050NEURL1E3 ubiquitin-protein ligase NEURL1Chromosome-10E3 ubiquitin-protein ligase NEURL1
O76087GAGE7G antigen 7Chromosome-XG antigen 7
O76099OR7C1Olfactory receptor 7C1Chromosome-19Olfactory receptor 7C1
O94778AQP8Aquaporin-8Chromosome-16Aquaporin-8
O94844RHOBTB1Rho-related BTB domain-containing protein 1Chromosome-10Rho-related BTB domain-containing protein 1
O95047OR2A4Olfactory receptor 2A4Chromosome-6Olfactory receptor 2A4
O95156NXPH2Neurexophilin-2Chromosome-2Neurexophilin-2
O95170CDRT1CMT1A duplicated region transcript 1 proteinChromosome-17CMT1A duplicated region transcript 1 protein
O95214LEPROTL1Leptin receptor overlapping transcript-like 1Chromosome-8Leptin receptor overlapping transcript-like 1

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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