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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 181-200 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q9BV87CNPPD1Protein CNPPD1Chromosome-2Protein CNPPD1
P49279SLC11A1Natural resistance-associated macrophage protein 1Chromosome-2Natural resistance-associated macrophage protein 1
A0AVI2FER1L5Fer-1-like protein 5Chromosome-2Fer-1-like protein 5
Q8N9V6ANKRD53Ankyrin repeat domain-containing protein 53Chromosome-2Ankyrin repeat domain-containing protein 53
Q8IWX5SGPP2Sphingosine-1-phosphate phosphatase 2Chromosome-2Sphingosine-1-phosphate phosphatase 2
Q9GZZ0HOXD1Homeobox protein Hox-D1Chromosome-2Homeobox protein Hox-D1
Q9P2E8MARCH4E3 ubiquitin-protein ligase MARCH4Chromosome-2E3 ubiquitin-protein ligase MARCH4
O75840KLF7Krueppel-like factor 7Chromosome-2Krueppel-like factor 7
Q17RM4CCDC142Coiled-coil domain-containing protein 142Chromosome-2Coiled-coil domain-containing protein 142
Q969H9DIRC1Disrupted in renal carcinoma protein 1Chromosome-2Disrupted in renal carcinoma protein 1
Q6ZVZ8ASB18Ankyrin repeat and SOCS box protein 18Chromosome-2Ankyrin repeat and SOCS box protein 18
P20264POU3F3POU domain, class 3, transcription factor 3Chromosome-2POU domain, class 3, transcription factor 3
Q56UN5MAP3K19Mitogen-activated protein kinase kinase kinase 19Chromosome-2Mitogen-activated protein kinase kinase kinase 19
Q96HZ4HES6Transcription cofactor HES-6Chromosome-2Transcription cofactor HES-6
Q6UX46FAM150BProtein FAM150BChromosome-2Protein FAM150B
A6NFX1MFSD2BMajor facilitator superfamily domain-containing protein 2BChromosome-2Major facilitator superfamily domain-containing protein 2B
Q6IMI4SULT6B1Sulfotransferase 6B1Chromosome-2Sulfotransferase 6B1
Q8N2C7UNC80Protein unc-80 homologChromosome-2Protein unc-80 homolog

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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