image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 181-200 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q6ZSI9CAPN12Calpain-12Chromosome-19Calpain-12
A8MX76CAPN14Calpain-14Chromosome-2Calpain-14
Q9BXY5CAPS2Calcyphosin-2Chromosome-12Calcyphosin-2
Q8WWF8CAPSLCalcyphosin-like proteinChromosome-5Calcyphosin-like protein
Q6XLA1CASC2Protein CASC2, isoform 3Chromosome-10Protein CASC2, isoform 3
Q6UXS9CASP12Inactive caspase-12Chromosome-11Inactive caspase-12
Q13166CATR1CATR tumorigenic conversion 1 proteinChromosome-7CATR tumorigenic conversion 1 protein
Q9H7T0CATSPERBCation channel sperm-associated protein subunit betaChromosome-14Cation channel sperm-associated protein subunit beta
Q6ZRH7CATSPERGCation channel sperm-associated protein subunit gammaChromosome-19Cation channel sperm-associated protein subunit gamma
Q6DHV5CC2D2BProtein CC2D2BChromosome-10Protein CC2D2B
Q5T0U0CCDC122Coiled-coil domain-containing protein 122Chromosome-13Coiled-coil domain-containing protein 122
Q6ZRS4CCDC129Coiled-coil domain-containing protein 129Chromosome-7Coiled-coil domain-containing protein 129
Q96MF4CCDC140Coiled-coil domain-containing protein 140Chromosome-2Coiled-coil domain-containing protein 140
Q17RM4CCDC142Coiled-coil domain-containing protein 142Chromosome-2Coiled-coil domain-containing protein 142
Q3MJ40CCDC144BCoiled-coil domain-containing protein 144BChromosome-17Coiled-coil domain-containing protein 144B
A6NI56CCDC154Coiled-coil domain-containing protein 154Chromosome-16Coiled-coil domain-containing protein 154
A2VCL2CCDC162PCoiled-coil domain-containing protein 162Chromosome-6Coiled-coil domain-containing protein 162
Q6TFL3CCDC171Coiled-coil domain-containing protein 171Chromosome-9Coiled-coil domain-containing protein 171
Q5BJE1CCDC178Coiled-coil domain-containing protein 178Chromosome-18Coiled-coil domain-containing protein 178
Q5TID7CCDC181Coiled-coil domain-containing protein 181Chromosome-1Coiled-coil domain-containing protein 181

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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