image source:http://filthy-frank.wikia.com/wiki/Chromosomes?file=Chromosome.jpg

The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.


MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.


We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!

        

Showing 181-200 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
 
Q14953KIR2DS5Killer cell immunoglobulin-like receptor 2DS5Chromosome-19Killer cell immunoglobulin-like receptor 2DS5
Q8IZJ0IFNL2Interferon lambda-2Chromosome-19Interferon lambda-2
Q6UWQ7IGFL2Insulin growth factor-like family member 2Chromosome-19Insulin growth factor-like family member 2
Q6UW60PCSK4Proprotein convertase subtilisin/kexin type 4Chromosome-19Proprotein convertase subtilisin/kexin type 4
Q96NG8ZNF582Zinc finger protein 582Chromosome-19Zinc finger protein 582
Q9UQ74PSG8Pregnancy-specific beta-1-glycoprotein 8Chromosome-19Pregnancy-specific beta-1-glycoprotein 8
Q17R55FAM187BProtein FAM187BChromosome-19Protein FAM187B
Q8TAW3ZNF671Zinc finger protein 671Chromosome-19Zinc finger protein 671
Q9HCX3ZNF304Zinc finger protein 304Chromosome-19Zinc finger protein 304
Q9H0M5ZNF700Zinc finger protein 700Chromosome-19Zinc finger protein 700
Q9H808TLE6Transducin-like enhancer protein 6Chromosome-19Transducin-like enhancer protein 6
Q8TAF7ZNF461Zinc finger protein 461Chromosome-19Zinc finger protein 461
Q9Y2G7ZFP30Zinc finger protein 30 homologChromosome-19Zinc finger protein 30 homolog
O76099OR7C1Olfactory receptor 7C1Chromosome-19Olfactory receptor 7C1
Q16478GRIK5Glutamate receptor ionotropic, kainate 5Chromosome-19Glutamate receptor ionotropic, kainate 5
Q5VIY5ZNF468Zinc finger protein 468Chromosome-19Zinc finger protein 468
Q92952KCNN1Small conductance calcium-activated potassium channel protein 1Chromosome-19Small conductance calcium-activated potassium channel protein 1
O75019LILRA1Leukocyte immunoglobulin-like receptor subfamily A member 1Chromosome-19Leukocyte immunoglobulin-like receptor subfamily A member 1
Q9Y6R6ZNF780BZinc finger protein 780BChromosome-19Zinc finger protein 780B
A8MZ59LEUTXLeucine-twenty homeoboxChromosome-19Leucine-twenty homeobox

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.

Proteomics

Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia
  • mark.baker@mq.edu.au

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia
  • shoba.ranganathan@mq.edu.au

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